SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene163249

Length: 364 nt

UniGene Fasta

>sp_v3.0_unigene163249
ATTTCAGTCCAAAACCTGGTTCCGGGTGTAATAAAGTTATAGGCAGAGCAGTCATGCTGGATGAAATCATCAACTATGTTCAATCTCTTCAACAATATGTAGAATTCTTATCAATGAAATTGGCAGCCGTTAATCCCAGCCTGGAGTTCAACATCGATAACTTTTTAGCCAGAGACACAAATACTGGCCAACCTTAACCTTCCTCACACCTGTTGCAAGGTCATTGACTTGGATAGGGTGCTGTGGAGCAAATCATTCCTGTAATCTTGACAAATCAGTGCAAACGACCTCATCTAAAGCCTGGTGGATGGACGCGGCCCTTTCATGCAGTTATTAAATGTGGTGGTTCAAGTCATTAAGAAAT

Ace file of the UniGene sp_v3.0_unigene163249

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	basic helix-loop-helix (bHLH) family protein	-	-	9.0e-15	74%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	80%
Sma3	BHLH transcription factor	-	-	1.049e-09	-

Source	Gene names
Sma3	AP22.3; AT1G68920; At1g10120; At1g18400; At1g26260; At1g59640; At1g68920; At1g73830; At2g18300; At3g07340; At3g23690; At4g34530; At4g36540; At5g48560; At5g50915; At5g62610; BEE1; BEE2; BEE3; BHLH137; BHLH31; BHLH44; BHLH49; BHLH50; BHLH58; BHLH62; BHLH63;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	plastid	GO:0009536	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	transcription regulator activity	GO:0030528	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein modification process	GO:0006464	Biological Process	-
Sma3	response to cytokinin stimulus	GO:0009735	Biological Process	-
Sma3	response to gibberellin stimulus	GO:0009739	Biological Process	-
Sma3	positive regulation of flower development	GO:0009911	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	petal morphogenesis	GO:0048446	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	Ubiquitin	IPR000626	-	-
Sma3		IPR001092	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Ureohydrolase	IPR006035	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	Helix-loop-helix DNA-binding	IPR011598	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G68920.1	basic helix-loop-helix (bHLH) DNA-binding superfamily protein chr1:25915620-25917675 FORWARD LENGTH=486	5.0e-19	74%
RefSeq	Arabidopsis thaliana	NP_001031255.1	transcription factor bHLH49 [Arabidopsis thaliana]	6.0e-19	74%
RefSeq	Populus trichocarpa	XP_002305434.1	predicted protein [Populus trichocarpa]	2.0e-19	74%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUN3

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 23 aas, your sequence is shorter than subject: 65 - 467

Fln protein: FSPKPGSGCNKVIGRAVMLDEIINYVQSLQQYVEFLSMKLAAVNPSLEFNIDNFLARDTNTGQP*

Protein Length: 66

Fln nts: ATTTCAGTCCAAAACCTGGTTCCGGGTGTAATAAAGTTATAGGCAGAGCAGTCATGCTGGATGAAATCATCAACTATGTTCAATCTCTTCAACAATATGTAGAATTCTTATCAATGAAATTGGCAGCCGTTAATCCCAGCCTGGAGTTCAACATCGATAACTTTTTAGCCAGAGACACAAATACTGGCCAACCTTAACCTTCCTCACACCTGTTGCAAGGTCATTGACTTGGATAGGGTGCTGTGGAGCAAATCATTCCTGTAATCTTGACAAATCAGTGCAAACGACCTCATCTAAAGCCTGGTGGATGGACGCGGCCCTTTCATGCAGTTATTAAATGTGGTGGTTCAAGTCATTAAGAAAT

Fln Alignment:

HA8LWWM01B0UQC___CNKVIGRAVMLDEIINYVQSLQQYVEFLSMKLAAVNPSLEFNIDNFLARD
A9NUN3________________CNKVTGKAVMLDEIINYVQSLQHQVEFLSMKLATVNPKLDFNIDNFFAKE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain