SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene163182

Length: 194 nt

UniGene Fasta

>sp_v3.0_unigene163182
GTTGCTAACCATGTGGAAGTTATTAGCAAGAATAATGATGACAAACAGTACATACAGGAATCGAAAGTCGATGGAGTTTTTGTGGTATCTGAAGATACAGAGAATGAACCACTTGGACGTCGCACGGAGATCAGATTGCACCTTAAAGATGAGGCCAGCAAAATATTTGGATGAGAGTAGACTGGAAGATCTAA

Ace file of the UniGene sp_v3.0_unigene163182

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	GRP94 n=2 Tax=Pinaceae RepID=A7YAU9_PINTA	-	-	2.0e-19	87%
FL-Next	tr=GRP94; Pinus taeda (Loblolly pine).	-	-	0.0	87%
Sma3	GRP94 homolog	-	-	6.418e-13	-

Source	Gene names
Sma3	At4g24190; CHLREDRAFT_97057; GSVIVT00014401001; HSP90; HSP90-7; HSP90B; OJ1540_H01.1; Os06g0716700; OsI_24473; OsJ_22671; P0481E08.35; P0541C02.2; PHYPADRAFT_216220; PHYPADRAFT_65832; POPTRDRAFT_818818; RCOM_1598250; SHD; T19F6.1; T22A6.20; VITISV_028074;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	endoplasmic reticulum	GO:0005783	Cellular Component	-
Sma3	endoplasmic reticulum lumen	GO:0005788	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	structural constituent of ribosome	GO:0003735	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	unfolded protein binding	GO:0051082	Molecular Function	-
Sma3	translation	GO:0006412	Biological Process	-
Sma3	protein folding	GO:0006457	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	protein secretion	GO:0009306	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	regulation of meristem structural organization	GO:0009934	Biological Process	-
Sma3	regulation of meristem growth	GO:0010075	Biological Process	-
Sma3	response to cadmium ion	GO:0046686	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosomal protein L28	IPR001383	-	-
Sma3	Heat shock protein Hsp90	IPR001404	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	Molecular chaperone, heat shock protein, endoplasmin	IPR015566	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G24190.1	SHD, HSP90.7, AtHsp90.7, AtHsp90-7 Chaperone protein htpG family protein chr4:12551902-12555851 REVERSE LENGTH=823	5.0e-19	70%
RefSeq	Arabidopsis thaliana	NP_974606.1	endoplasmin-like protein [Arabidopsis thaliana]	6.0e-19	70%
RefSeq	Populus trichocarpa	XP_002307732.1	predicted protein [Populus trichocarpa]	2.0e-19	70%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A7YAU9

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 562 aas, your sequence is shorter than subject: 58 - 834

Fln protein: VANHVEVISKNNDDKQYIQESKVDGVFVVSEDTENEPLGRRTEIRLHLKDEASKIFG*

Protein Length: 59

Fln nts: GTTGCTAACCATGTGGAAGTTATTAGCAAGAATAATGATGACAAACAGTACATACAGGAATCGAAAGTCGATGGAGTTTTTGTGGTATCTGAAGATACAGAGAATGAACCACTTGGACGTCGCACGGAGATCAGATTGCACCTTAAAGATGAGGCCAGCAAAATATTTGGATGAGAGTAGACTGGAAGATCTAA

Fln Alignment:

HA8LWWM01CSMDG___VANHVEVISKNNDDKQYIQESKVDGVFVVSEDTENEPLGRRTEIRLHLKDEASK
A7YAU9________________VADHVEVISKNNDDKQYIWESKADGAFAVSEDTENEPLGRGTEIRLHLKDEASE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain