SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene163115

Length: 364 nt

UniGene Fasta

>sp_v3.0_unigene163115
AACCAAGTCTTGACCATTCGCCGTGGCTCGCATCTTCACACGCAGCATGTCGTCGCAATTCTATTCCCTTTCAGCTCCATTGAAGAACAATCAGCCTTTCAACTTCTCAGATCTCAAAGGTCAAGTCGTCCTCGTTGTCAACACAGCTTCAGCATGCGGCTTCACGCCACAGTTTGACTCGTTGCAAAAAGTTTATCAGCAGTACAAGGATCAAGGTTTCACGGTGGTCGGATTCCCTTGCAACCAGTTTGGCAGCCAGGACAAAGGCACCAATGATGAAATAGAGAGTTTCTGCAAAGTCAACTTTGGCGTGACATTTCCATTGATGGCCAAGTCGGACGTGAATGGCGACAACACCAACGAC

Ace file of the UniGene sp_v3.0_unigene163115

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glutathione peroxidase n=1 Tax=Schizosaccharomyces japonicus yFS275 RepID=B6K027_SCHJY	-	-	3.0e-35	69%
FL-Next	sp=Glutathione peroxidase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	50%
Sma3	Glutathione peroxidase	-	-	9.387e-16	-

Source	Gene names
Sma3	CHLREDRAFT_137012; CHLREDRAFT_143122; GHPOD; GPX3; GPX5; Gpx; POPTRDRAFT_278991; gpxh;

Source	GOs	Term	Type	Identity
Sma3	glutathione peroxidase activity	GO:0004602	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glutathione peroxidase	IPR000889	-	0.0	-
Sma3		IPR012335	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002299535.1	glutathione peroxidase [Populus trichocarpa]	4.0e-23	45%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NN61

Fln msg: Distance to subject end: 54 aas, your sequence is shorter than subject: 106 - 171

Fln protein: MSSQFYSLSAPLKNNQPFNFSDLKGQVVLVVNTASACGFTPQFDSLQKVYQQYKDQGFTVVGFPCNQFGSQDKGTNDEIESFCKVNFGVTFPLMAKSDVNGDNTND

Protein Length: 107

Fln nts: AACCAAGTCTTGACCATTCGCCGTGGCTCGCATCTTCACACGCAGC_-_ATGTCGTCGCAATTCTATTCCCTTTCAGCTCCATTGAAGAACAATCAGCCTTTCAACTTCTCAGATCTCAAAGGTCAAGTCGTCCTCGTTGTCAACACAGCTTCAGCATGCGGCTTCACGCCACAGTTTGACTCGTTGCAAAAAGTTTATCAGCAGTACAAGGATCAAGGTTTCACGGTGGTCGGATTCCCTTGCAACCAGTTTGGCAGCCAGGACAAAGGCACCAATGATGAAATAGAGAGTTTCTGCAAAGTCAACTTTGGCGTGACATTTCCATTGATGGCCAAGTCGGACGTGAATGGCGACAACACCAACGAC

Fln Alignment:

HA8LWWM01B4BA1___QPFNFSDLKGQVVLVVNTASACGFTPQ-FDSLQKVYQQYKDQGFTVVGFPCNQFGSQDKGTNDEIESFCKVNFGVTFPLMAKSDVNGDNT
A9NN61________________QDVDLSTYKGKVLLVVNVASQCGFTKSNYSQLTELYNKYKDKDFEILAFPCNQFGSQEPGTNEEIKDFACTRYKAEFPIFDKVDVNGPNT

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain