SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene163047

Length: 371 nt

UniGene Fasta

>sp_v3.0_unigene163047
AAATACAGAACACACCTTTAACATGGCTGACGAAGAGTTTTATATTCGATATTATATTGGACACCGAGGAAAATACGGCCATGAATTTTTGGAATTTGAGTTTCGCTCAAATGGCAAATTAAGATATGCTAACAACTCGCACTATAAACAAGAAGCGATCATCCGAAAAGAGTCTTCGTGAACGACGTTGTATTGCAAGAGCTTAAGAAAATCATTGACGACAGCACTATATTAAAGCAAGACGACGCTAAATGGCCCGAGCCTGATCGCGTTGGCAAACAAGAATTAGAAATTGTTTATGGCAACGAGCACATCTCCTTCAGCACATCGAAGATCGGCTCTTTAGTAGATGTTCAAGCCAGCGAAGATAC

Ace file of the UniGene sp_v3.0_unigene163047

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein mago nashi n=7 Tax=Magnoliophyta RepID=B6ST87_MAIZE	-	-	6.0e-40	69%
FL-Next	tr=Mago nashi; Taiwania cryptomerioides.	-	-	0.0	62%
Sma3	Mago nashi-like protein	-	-	5.77e-21	-

Source	Gene names
Sma3	At1g02140; CHLREDRAFT_184322; GSVIVT00002830001; GSVIVT00014203001; LOC_Os12g18880; MGO1; MICPUCDRAFT_52631; MICPUN_85854; OSTLU_13748; Os08g0107900; Os12g0287200; OsI_27536; OsI_38020; OsJ_25767; Ot03g05030; P0450B04.29; PHATR_33540; PHYPADRAFT_109861; P

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	signal peptidase complex	GO:0005787	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nuclear speck	GO:0016607	Cellular Component	-
Sma3	exon-exon junction complex	GO:0035145	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	signal peptide processing	GO:0006465	Biological Process	-
Sma3	embryo development ending in seed dormancy	GO:0009793	Biological Process	-
Sma3	pollen tube guidance	GO:0010183	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Mago nashi protein	IPR004023	-	0.0	-
Sma3	Signal peptidase 22kDa subunit	IPR007653	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G02140.1	MEE63, MAGO, HAP1 mago nashi family protein chr1:403467-404401 REVERSE LENGTH=150	2.0e-27	70%
RefSeq	Arabidopsis thaliana	NP_171716.1	protein mago nashi [Arabidopsis thaliana]	2.0e-27	70%
RefSeq	Populus trichocarpa	XP_002301235.1	predicted protein [Populus trichocarpa]	4.0e-27	69%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A0S5W8

Fln msg: Overlapping hits, possible frame ERROR between 211 and 166, Distance to subject end: 30 aas, your sequence is shorter than subject: 116 - 149

Fln protein: MADEEFYIRYYIGHRGKYGHEFLEFEFRSNGKLRYANNSHYKQEAIIxxxxxxxxxxxxxxxxxIDDSTILKQDDAKWPEPDRVGKQELEIVYGNEHISFSTSKIGSLVDVQASED

Protein Length: 117

Fln nts: AAATACAGAACACACCTTTAAC_-_ATGGCTGACGAAGAGTTTTATATTCGATATTATATTGGACACCGAGGAAAATACGGCCATGAATTTTTGGAATTTGAGTTTCGCTCAAATGGCAAATTAAGATATGCTAACAACTCGCACTATAAACAAGAAGCGATCATCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxATTGACGACAGCACTATATTAAAGCAAGACGACGCTAAATGGCCCGAGCCTGATCGCGTTGGCAAACAAGAATTAGAAATTGTTTATGGCAACGAGCACATCTCCTTCAGCACATCGAAGATCGGCTCTTTAGTAGATGTTCAAGCCAGCGAAGATAC

Fln Alignment:

HA8LWWM01DRB07___EFYIRYYIGHRGKYGHEFLEFEFRSNGKLRYANNSHYKQEAIIRxxxxxxxxxxxxxxxIIDDSTILKQDDAKWPEPDRVGKQELEIVYGNEHISFSTSKIGSLVDVQASED
A0S5W8________________EFYVRYYVGHKGKFGHEFLEFEFRPDGKLRYANNSNYKNDTMIRxxxxxxxxxxxxxxxIIAESEIMKEDDNNWPEPDRVGRQELEIVMGNEHISFTTSKIGSLVDVQSSKD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain