SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene163036

Length: 367 nt

UniGene Fasta

>sp_v3.0_unigene163036
CAAAGGGAAATGAATTACACCTTCCACGACATCAAAAATATCGTTTAACCATATCTCGACGACCTTCCGGCTCATTCGCGAAAGCGGACTCAACATCCGCAGCATTTAAGAGCAATATTTCTACGCTGTCGACACTACAAAATACGACTCAATCCACACAAATGTGTGTTCTACGTCAGTTCTGGTCGTTTACTCGGCTTTGTAGTCTCGAAATATGGAATTCGTCTCGACCCATGTAAGGTTCAGGCAATTATAAATTTGCCTCCACCTTCAAGTGTGCTTCAGATACAAAAATTACAAGGGAAAGCAAACTTTCTGAGGAGGTTCATACCAAATTACGCCGAAATTGCTAAAGGTTATACTCGTC

Ace file of the UniGene sp_v3.0_unigene163036

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Retrotransposon protein, putative, unclassified n=16 Tax=Oryza RepID=Q2R0G5_ORYSJ	-	-	3.0e-20	41%
FL-Next	sp=Uncharacterized mitochondrial protein AtMg00860; Arabidopsis thaliana (Mouse-ear cress). Mitochondrion.	-	-	0.0	26%

Source	Gene names
Sma3	POPTRDRAFT_792417;

Source	InterPros	Term	Type	e value	Identity
Sma3	Reverse transcriptase	IPR000477	-	0.0	-
Sma3	Ribonuclease H domain	IPR002156	-	0.0	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002336419.1	predicted protein, partial [Populus trichocarpa]	3.0e-25	47%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: sp_plants

Fln subject: P92523

Fln msg: Distance to subject end: 66 aas, W1: There is no M at the beginning, your sequence is shorter than subject: 106 - 158

Fln protein: PYLDDLPAHSRKRTQHPQHLRAIFLRCRHYKIRLNPHKCVFYVSSGRLLGFVVSKYGIRLDPCKVQAIINLPPPSSVLQIQKLQGKANFLRRFIPNYAEIAKGYTR

Protein Length: 107

Fln nts: CAAAGGGAAATGAATTACACCTTCCACGACATCAAAAATATCGTTTAACCATATCTCGACGACCTTCCGGCTCATTCGCGAAAGCGGACTCAACATCCGCAGCATTTAAGAGCAATATTTCTACGCTGTCGACACTACAAAATACGACTCAATCCACACAAATGTGTGTTCTACGTCAGTTCTGGTCGTTTACTCGGCTTTGTAGTCTCGAAATATGGAATTCGTCTCGACCCATGTAAGGTTCAGGCAATTATAAATTTGCCTCCACCTTCAAGTGTGCTTCAGATACAAAAATTACAAGGGAAAGCAAACTTTCTGAGGAGGTTCATACCAAATTACGCCGAAATTGCTAAAGGTTATACTCGTC

Fln Alignment:

HA8LWWM01BZEU7___HLRAIFLRCRHYKIRLNPHKCVFYVSSGRLLGF--VVSKYGIRLDPCKVQAIINLPPPSSVLQIQKLQGKANFLRRFIPNYAEIAKGYT
P92523________________HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKNTTELRGFLGLTGYYRRFVKNYGKIVRPLT

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain