SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene163002

Length: 194 nt

UniGene Fasta

>sp_v3.0_unigene163002
TTGACGAGCGTGCAGTTCTTAAGCATTTTGATTGGCCCGAGGGTAAAGCTGATACTTTGAGGGAAGCAGCATTTGAATATCAAGATTTGCAAAGGTTGGAGTCAGAAATTGCTTCCTTTGTTGATGATCCAGTACTTTCTCGTGACACGGCCCTCCATAGGATGTACTCCTTACTTGAATCAGTTGAGAAAAGT

Ace file of the UniGene sp_v3.0_unigene163002

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein CHUP1, chloroplastic n=3 Tax=Arabidopsis RepID=CHUP1_ARATH	-	-	2.0e-20	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Sma3	Chloroplast unusual positioning 1B	-	-	2.694e-09	-

Source	Gene names
Sma3	AT4g18560; At1g48280; At3g25690; At4g18570; CHUP1; CHUP1A; CHUP1B; F11A17.16; F28J12.220; GSVIVT00029855001; GSVIVT00030273001; GSVIVT00035896001; LOC_Os03g18300; OJ1268_B08.2; OJ1735_C10.20; OSJNBb0032K15.8; Os03g0294100; Os05g0573900; Os08g0129600; Os12

Source	GOs	Term	Type	e value	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Phosphoglycerate/bisphosphoglycerate mutase, active site	IPR001345	-	-
Sma3	Fructose-2,6-bisphosphatase	IPR003094	-	-
Sma3	Leucine zipper, homeobox-associated	IPR003106	-	-
Sma3	Histidine phosphatase superfamily, clade-1	IPR013078	-	-
Sma3	6-phosphofructo-2-kinase	IPR013079	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G25690.1	CHUP1 Hydroxyproline-rich glycoprotein family protein chr3:9354061-9357757 FORWARD LENGTH=1004	3.0e-26	75%
RefSeq	Arabidopsis thaliana	NP_001189975.1	protein CHUP1 [Arabidopsis thaliana]	3.0e-26	75%
RefSeq	Populus trichocarpa	XP_002315963.1	predicted protein [Populus trichocarpa]	2.0e-24	71%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NUN1

Fln msg: Distance to subject end: 116 aas, your sequence is shorter than subject: 64 - 314

Fln protein: DERAVLKHFDWPEGKADTLREAAFEYQDLQRLESEIASFVDDPVLSRDTALHRMYSLLESVEKS

Protein Length: 65

Fln nts: TTGACGAGCGTGCAGTTCTTAAGCATTTTGATTGGCCCGAGGGTAAAGCTGATACTTTGAGGGAAGCAGCATTTGAATATCAAGATTTGCAAAGGTTGGAGTCAGAAATTGCTTCCTTTGTTGATGATCCAGTACTTTCTCGTGACACGGCCCTCCATAGGATGTACTCCTTACTTGAATCAGTTGAGAAAAGT

Fln Alignment:

HA8LWWM01DEHM5___DERAVLKHFDWPEGKADTLREAAFEYQDLQRLESEIASFVDDPVLSRDTALHRMYSLLESVEKS
A9NUN1________________DERAVLKHFDWPESKADALREAAFEYQDLKRLESVAASFVDNPNLSCDAALKKMYSLLEKVEQS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain