SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene163001

Length: 391 nt

UniGene Fasta

>sp_v3.0_unigene163001
AAACGAAATCGGCCTTGCTAACATGGCGAAATCGAAGATCCAAGAAGGGGCTTTGCATGAACTAGTGGATCCGCAGTTGGAGATTGAAGCAAATCATGCGCTGAAGGTCACGGTTAGTGCAGTTGCCGAATTAGCCTTTCGATGCCTTGCGTCAGAGAGGGATAGCAGGCCACACATGACGGAAGTTGCTGGACAGCTCAGGGAAATCAAACAATCGTGGGATACGTCCACTGATCCAGGTGAACAACAGTGGGGATCGTTTTCAAAGAGCAAACAGCCATTATCTCCCATCTCTGTGCAAGACAACTGGCACGTGGTTGAGGACATGAACAGCAAGCAGAACATGGTGGACAGACCACATTGACATGATTTTCAACCTGCTAAGCGTTGA

Ace file of the UniGene sp_v3.0_unigene163001

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Wall-associated kinase, putative n=1 Tax=Ricinus communis RepID=B9SFY5_RICCO	-	-	2.0e-13	42%
FL-Next	sp=Wall-associated receptor kinase-like 14; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	36%

Source	Gene names
Sma3	F4N21.1; T4O24.5;

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G66880.1	Protein kinase superfamily protein chr1:24946928-24955438 FORWARD LENGTH=1296	1.0e-14	55%
RefSeq	Arabidopsis thaliana	NP_176860.2	protein kinase domain-containing protein [Arabidopsis thaliana]	1.0e-14	55%
RefSeq	Populus trichocarpa	XP_002318540.1	predicted protein [Populus trichocarpa]	2.0e-16	50%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q8RY67

Fln msg: your sequence is shorter than subject: 121 - 708

Fln protein: NEIGLANMAKSKIQEGALHELVDPQLEIEANHALKVTVSAVAELAFRCLASERDSRPHMTEVAGQLREIKQSWDTSTDPGEQQWGSFSKSKQPLSPISVQDNWHVVEDMNSKQNMVDRPH*

Protein Length: 122

Fln nts: AAACGAAATCGGCCTTGCTAACATGGCGAAATCGAAGATCCAAGAAGGGGCTTTGCATGAACTAGTGGATCCGCAGTTGGAGATTGAAGCAAATCATGCGCTGAAGGTCACGGTTAGTGCAGTTGCCGAATTAGCCTTTCGATGCCTTGCGTCAGAGAGGGATAGCAGGCCACACATGACGGAAGTTGCTGGACAGCTCAGGGAAATCAAACAATCGTGGGATACGTCCACTGATCCAGGTGAACAACAGTGGGGATCGTTTTCAAAGAGCAAACAGCCATTATCTCCCATCTCTGTGCAAGACAACTGGCACGTGGTTGAGGACATGAACAGCAAGCAGAACATGGTGGACAGACCACATTGA___CATGATTTTCAACCTGCTAAGCGTTGA

Fln Alignment:

HA8LWWM01EB5OW___EIGLANMAKSKIQEGALHELVDPQLEIEANHALKVTVSAVAELAFRCLASERDSRPHMTEVAGQLREIKQS-WD------------TSTDPGEQQWGSFSK---------SKQP-----------LSPISVQDNW
Q8RY67________________EINLAALAVDKIGSGCIDEIIDPILDLDLDAWTLSSIHTVAELAFRCLAFHSDMRPTMTEVADELEQIRLSGWIPSMSLDSPAGSLRSSDRGSERSVKQSSIGSRRVVIPQKQPDCLASVEEISDSSPISVQDPW

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain