SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene162896

Length: 235 nt

UniGene Fasta

>sp_v3.0_unigene162896
AAAAATACACTGGGTCAAAAATATTATAGATCATGCCAAAAGCATCACAGAATTTATCTACAATCATACATTGATTTTGAGCCTCATGAGGAAACACACTGGGGGCAAGGATATTATTAGGCCTGCCATCACTAGATTTGCTACACATTTTTTGACATTGCAATCTATGTTTTCCCAACATAGAAACTTGCAAAAGATGTTTTCTAGTGATGAATGGAATCAAAGCAATTGGTCT

Ace file of the UniGene sp_v3.0_unigene162896

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	48%

Source	Gene names
Sma3	GSVIVT00025033001; GSVIVT00033935001; VITISV_003657; VITISV_028004;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase C12, ubiquitin carboxyl-terminal hydrolase 1	IPR001578	-	-
Sma3	Zinc finger, BED-type predicted	IPR003656	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3		IPR011523	-	-
Sma3		IPR015706	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002311919.1	predicted protein [Populus trichocarpa]	5.0e-18	47%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5C171

Fln msg: Distance to subject end: 279 aas, your sequence is shorter than subject: 78 - 926

Fln protein: KIHWVKNIIDHAKSITEFIYNHTLILSLMRKHTGGKDIIRPAITRFATHFLTLQSMFSQHRNLQKMFSSDEWNQSNWS

Protein Length: 79

Fln nts: AAAAATACACTGGGTCAAAAATATTATAGATCATGCCAAAAGCATCACAGAATTTATCTACAATCATACATTGATTTTGAGCCTCATGAGGAAACACACTGGGGGCAAGGATATTATTAGGCCTGCCATCACTAGATTTGCTACACATTTTTTGACATTGCAATCTATGTTTTCCCAACATAGAAACTTGCAAAAGATGTTTTCTAGTGATGAATGGAATCAAAGCAATTGGTCT

Fln Alignment:

HA8LWWM01A9KQS___KIHWVKNIIDHAKSITEFIYNHTLILSLMRKHTGGKDIIRPAITRFATHFLTLQSMFSQHRNLQKMFSSDEWNQSNWS
A5C171________________KQEWVSTVLEEANTITHYIYSHAWILNMMRKFTGGRELIRPRITRFVTNFLSLRSIVVQEDNLKLMFSHMDWMSSVYS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain