SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene162847

Length: 346 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene162847
TGATGAACCTATTACTGGTAGGCGGCATGGTTTGCAGCATCCATCAAGGAGGATGGTAGGCAAATGGGGTTCAGATTTTTGGAAGGATCGTCAAATGATTGATAAAGGGGAAGTTTCTGATTCTGAACAAGAGTCAAAAAAGTCAGACTCAGATTACCAGGTCGAGGAAGATTTTGTAAATAATGCATCTGAGGGTGGAGAGGACCAGTCAGAACCAGCGGATTGTTATGGTGAGAAGAACTTTGGAGAAAATCGAGACCAAGCAGGGGTTCCTGTAGATGACATGTTGTCGGATGATTATTATGAGCAAGGTGGGGAAGATCAAAGTGAATCATTATCAGGTAAA

Ace file of the UniGene sp_v3.0_unigene162847 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chromodomain helicase DNA binding protein, putative n=1 Tax=Ricinus communis RepID=B9SYQ4_RICCO	-	-	1.0e-11	41%
FL-Next	tr=Chromodomain helicase DNA binding protein, putative; Ricinus communis (Castor bean).	-	-	0.0	43%

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002313369.1	chromatin remodeling complex subunit [Populus trichocarpa]	1.0e-12	45%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9SYQ4

Fln msg: Distance to subject end: 1535 aas, your sequence is shorter than subject: 115 - 1718

Fln protein: DEPITGRRHGLQHPSRRMVGKWGSDFWKDRQMIDKGEVSDSEQESKKSDSDYQVEEDFVNNASEGGEDQSEPADCYGEKNFGENRDQAGVPVDDMLSDDYYEQGGEDQSESLSGK

Protein Length: 116

Fln nts: TGATGAACCTATTACTGGTAGGCGGCATGGTTTGCAGCATCCATCAAGGAGGATGGTAGGCAAATGGGGTTCAGATTTTTGGAAGGATCGTCAAATGATTGATAAAGGGGAAGTTTCTGATTCTGAACAAGAGTCAAAAAAGTCAGACTCAGATTACCAGGTCGAGGAAGATTTTGTAAATAATGCATCTGAGGGTGGAGAGGACCAGTCAGAACCAGCGGATTGTTATGGTGAGAAGAACTTTGGAGAAAATCGAGACCAAGCAGGGGTTCCTGTAGATGACATGTTGTCGGATGATTATTATGAGCAAGGTGGGGAAGATCAAAGTGAATCATTATCAGGTAAA

Fln Alignment:

HA8LWWM01B57UN___LQHPSRRM-VGKWGSDFWKDRQMIDKGEVXXXXXXXXXXXXDYQVEEDFVNNASEGGEDQSEPADCYGEKNFGEN-RDQAGVPVDDMLSDDYYEQGGEDQSESL
B9SYQ4________________LQPPGRRNEAGKWGSSFWKDCQPLG---AQGASDSAHDSKSDYKIAEGSEDNMSDGRDGTLESEDEEGQKDLNKGQKGQSDVPADEMLSDEYYEQDGEDQSDSI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain