SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene162785

Length: 138 nt

UniGene Fasta

>sp_v3.0_unigene162785
TTGACAGTTACTATTTTGGATTTGGTTAACCAAGCATCAAACTACAAACAACTTAAGAAGGGAGCCAACGAAGCCACCAAGACACTGAATCGAGGTATTGCTTCTTTGATCGTTTTGGCCGCTGATACAGAACCAATT

Ace file of the UniGene sp_v3.0_unigene162785

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana] gb\|AAK32786.1\|AF361618_1 AT4g12600/T1P17_190 [Arabidopsis thaliana] emb\|CAB53753.1\| Ribosomal protein L7Ae-like [Arabidopsis thaliana] emb\|CAB78303.1\| Ribosomal protein L7Ae-lik	-	-	1.0e-13	80%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Sma3	NHP2-like protein 1	-	-	2.399e-08	-

Source	Gene names
Sma3	AT4g12600; AT4g22380; At4g12600; At5g20160; GSVIVT00016877001; GSVIVT00018373001; L7Ae; LOC_Os03g13800; LOC_Os10g03540; MICPUCDRAFT_35474; MICPUN_89886; OSJNAa0049K09.17; OSJNBa0056A20.5; OSTLU_41236; Os03g0241200; Os10g0124000; OsI_10701; OsI_32608; OsJ_

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	ribosome	GO:0005840	Cellular Component	-
Sma3	ribonucleoprotein complex	GO:0030529	Cellular Component	-
Sma3	ribosome biogenesis	GO:0042254	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	H/ACA ribonucleoprotein complex, subunit Nhp2, eukaryote	IPR002415	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Ribosomal protein L7Ae conserved site	IPR004037	-	-
Sma3	Ribosomal protein L7Ae/L30e/S12e/Gadd45	IPR004038	-	-
Sma3	Ribosomal protein L7Ae/L8/Nhp2 family	IPR018492	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G12600.2	-	1.0e-19	80%
RefSeq	Arabidopsis thaliana	NP_192997.1	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family protein [Arabidopsis thaliana]	6.0e-20	80%
RefSeq	Populus trichocarpa	XP_002327218.1	predicted protein [Populus trichocarpa]	8.0e-20	78%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NNS4

Fln msg: Distance to subject end: 65 aas, your sequence is shorter than subject: 46 - 127

Fln protein: LTVTILDLVNQASNYKQLKKGANEATKTLNRGIASLIVLAADTEPI

Protein Length: 47

Fln nts: TTGACAGTTACTATTTTGGATTTGGTTAACCAAGCATCAAACTACAAACAACTTAAGAAGGGAGCCAACGAAGCCACCAAGACACTGAATCGAGGTATTGCTTCTTTGATCGTTTTGGCCGCTGATACAGAACCAATT

Fln Alignment:

HA8LWWM01DJR6Y___LTVTILDLVNQASNYKQLKKGANEATKTLNRGIASLIVLAADTEPI
A9NNS4________________LSITIMDLVQQAANYKQLKKGANEATKTLNRGIAEFVVMAADTEPL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain