UniGene Name: sp_v3.0_unigene162648
Length: 177 nt
UniGene Fasta |
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>sp_v3.0_unigene162648
G |
Ace file of the UniGene sp_v3.0_unigene162648 |
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Annotations |
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Source | Descriptions | Term | Type | e value | Identity |
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AutoFact | RecName: Full=Lysine-specific histone demethylase 1 homolog 3; AltName: Full=Flavin-containing amine oxidase domain-containing protein 3; AltName: Full=Protein FLOWERING LOCUS D-LIKE; AltName: Full=Protein LSD1-LIKE 3 emb|CAH68056.1| B0103C08-B0602B01.13 | - | - | 3.0e-12 | 60% |
FL-Next | sp=Lysine-specific histone demethylase 1 homolog 3; Oryza sativa subsp. japonica (Rice). | - | - | 0.0 | 60% |
Sma3 | Flavin-containing amine oxidase domain-containing protein, putative | - | - | 5.237e-09 | - |
Source | ECs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | EC:1.-.-.- | - | 2.685e-07 | - | |
Sma3 | L-amino-acid oxidase. | EC:1.4.3.2 | - | 3.142e-08 | - |
Source | KEGGs | Term | Type | e value | Identity |
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Sma3 | Alanine, aspartate and glutamate metabolism | 00250 | 3.142e-08 | % | |
Sma3 | Cysteine and methionine metabolism | 00270 | 3.142e-08 | % | |
Sma3 | Valine, leucine and isoleucine degradation | 00280 | 3.142e-08 | % | |
Sma3 | Tyrosine metabolism | 00350 | 3.142e-08 | % | |
Sma3 | Phenylalanine metabolism | 00360 | 3.142e-08 | % | |
Sma3 | Tryptophan metabolism | 00380 | 3.142e-08 | % | |
Sma3 | Phenylalanine, tyrosine and tryptophan biosynthesis | 00400 | 3.142e-08 | % | |
Sma3 | Isoquinoline alkaloid biosynthesis | 00950 | 3.142e-08 | % | |
Sma3 | Metabolic pathways | 01100 | 3.142e-08 | % |
Source | Gene names |
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Sma3 | At1g62830; At3g13682; B0103C08-B0602B01.13; F23N19.19; GSVIVT00018140001; GSVIVT00027608001; GSVIVT00031221001; HDMA901; HDMA902; HDMA903; LDL1; LDL2; LOC_Os04g47270; MICPUCDRAFT_22895; MICPUN_61392; MMM17.10; OSJNBa0084K11.6; Os04g0560300; OsI_016382; Os |
Source | GOs | Term | Type | e value | Identity |
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Sma3 | nucleus | GO:0005634 | Cellular Component | 0.0 | - |
Sma3 | electron carrier activity | GO:0009055 | Molecular Function | 0.0 | - |
Sma3 | oxidoreductase activity | GO:0016491 | Molecular Function | 0.0 | - |
Sma3 | regulation of transcription, DNA-dependent | GO:0006355 | Biological Process | 0.0 | - |
Sma3 | chromatin modification | GO:0016568 | Biological Process | 0.0 | - |
Sma3 | histone deacetylation | GO:0016575 | Biological Process | 0.0 | - |
Sma3 | root development | GO:0048364 | Biological Process | 0.0 | - |
Sma3 | histone H3-K4 methylation | GO:0051568 | Biological Process | 0.0 | - |
Sma3 | oxidation-reduction process | GO:0055114 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
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Sma3 | Zinc finger, GATA-type | IPR000679 | - | 0.0 | - |
Sma3 | Amine oxidase | IPR002937 | - | 0.0 | - |
Sma3 | Aromatic-ring hydroxylase-like | IPR003042 | - | 0.0 | - |
Sma3 | SWIRM domain | IPR007526 | - | 0.0 | - |
Sma3 | Peptidase C14, ICE, catalytic subunit p20, active site | IPR016129 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
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ATG | Arabidoptis thaliana | AT3G10390.1 | FLD Flavin containing amine oxidoreductase family protein chr3:3229293-3232345 FORWARD LENGTH=884 | 3.0e-15 | 53% |
RefSeq | Arabidopsis thaliana | NP_187650.4 | lysine-specific histone demethylase 1 [Arabidopsis thaliana] | 4.0e-15 | 53% |
RefSeq | Populus trichocarpa | XP_002300664.1 | predicted protein [Populus trichocarpa] | 9.0e-17 | 62% |
Full-Lengther Next Prediction |
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Fln status: Internal
Fln database: sp_plants
Fln subject: Q7XUR2
Fln msg: Distance to subject end: 153 aas, your sequence is shorter than subject: 58 - 811
Fln protein:
E
Protein Length:
59
Fln nts:
G
Fln Alignment:
HA8LWWM01A0J73___EGRVFFAGEATNRRYPATMHGAFLSGLREAANISKVYNSRSMPQKTDKSLSKDSELSA
Q7XUR2________________DGRLFFAGEATTRRYPATMHGAFISGLREAANITLHANARAAKSKVEKGPSTNTQACA
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain