SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene162638

Length: 377 nt

UniGene Fasta

>sp_v3.0_unigene162638
AAATGATCCTTCTGCTGAGAGTGCTGTCCAGGGCACAAGAGTTGAACGTTTAGATATCACTGGGATTTCAGAGTTAAGGGATGATGGACATCTATCCAAATACAATCTCAAATCGAAAAATGGCTCTCAGGATTGTTTGCATTGGTGCCTTCCAGGGGTGCCTGATACATGGAACGAGCTCCTCTTCGCTCAGCTCTCGTTTCCACAACCAAATAAACTATCAGCACAAATATGATGCTGCAGCATCGTTTACCATTGCACGGGATTCTATCTTTGTTTTATCGAAGTGCAACTACTGCAACATGTACAAATAATGAATTTGGAGAGTTCTTGTAATAGATCACAGTAACTGCACATTTCTTACTGTCTCATATCTC

Ace file of the UniGene sp_v3.0_unigene162638

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein trichome birefringence-like 16 [Arabidopsis thaliana] gb\|AED92876.1\| protein trichome birefringence-like 16 [Arabidopsis thaliana]	-	-	1.0e-18	60%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%

Source	Gene names
Sma3	At2g37720; At5g20680; GSVIVT00019316001; GSVIVT00027906001; LOC_Os03g19470; LOC_Os11g13800; LOC_Os12g36750; OJ1655_B12.16; Os09g0397400; Os11g0241900; Os12g0516800; Os12g0554100; OsI_31279; OsI_35655; OsI_38679; OsJ_10568; OsJ_29266; OsJ_33493; OsJ_36292;

Source	GOs	Term	Type	e value	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR004253	-	0.0	-
Sma3	Cas1p 10 TM acyl transferase domain	IPR012419	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G20680.1	TBL16 TRICHOME BIREFRINGENCE-LIKE 16 chr5:6998946-7001596 FORWARD LENGTH=551	3.0e-23	60%
RefSeq	Arabidopsis thaliana	NP_001078609.1	protein trichome bi	4.0e-23	60%
RefSeq	Populus trichocarpa	XP_002337934.1	predicted protein, partial [Populus trichocarpa]	6.0e-26	60%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NUP3

Fln msg: your sequence is shorter than subject: 78 - 390

Fln protein: NDPSAESAVQGTRVERLDITGISELRDDGHLSKYNLKSKNGSQDCLHWCLPGVPDTWNELLFAQLSFPQPNKLSAQI*

Protein Length: 79

Fln nts: AAATGATCCTTCTGCTGAGAGTGCTGTCCAGGGCACAAGAGTTGAACGTTTAGATATCACTGGGATTTCAGAGTTAAGGGATGATGGACATCTATCCAAATACAATCTCAAATCGAAAAATGGCTCTCAGGATTGTTTGCATTGGTGCCTTCCAGGGGTGCCTGATACATGGAACGAGCTCCTCTTCGCTCAGCTCTCGTTTCCACAACCAAATAAACTATCAGCACAAATATGA___TGCTGCAGCATCGTTTACCATTGCACGGGATTCTATCTTTGTTTTATCGAAGTGCAACTACTGCAACATGTACAAATAATGAATTTGGAGAGTTCTTGTAATAGATCACAGTAACTGCACATTTCTTACTGTCTCATATCTC

Fln Alignment:

HA8LWWM01CPDSN___NDPSAESAVQGTRVERLDITGISELRDDGHLSKYNLKSKNGSQDCLHWCLPGVPDTWNELLFAQLSFPQPNKLSAQI
A9NUP3________________NDPAAESAVQGTRVEYLDITGISELRDDAHLSKYSLKSNNGSQDCLHWCLPGVPDTWNELLFARLLFPQPKKPSAQI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain