SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene162630

Length: 376 nt

UniGene Fasta

>sp_v3.0_unigene162630
ACAAGATATTTGTCGTAGTCGACAGACTCACTACATATGCCCACTTTATGGCAATAAAAAAAGCTGACACAACTAAGCAAATAACGGATGTGTTTTGTAAAAACATTTACAAATTACATGGTTTTCCCAAGGACATTGTCAGTGACAGAGACGCAAAATTTAAAGGCAATTTTTGGAAAGATTTCTGCCACCAAGCAAGAATATCTCTCAACATAAGTTCGGCTTATCACCCCCAAACAGATGGTCAAACTGAAGTTGTAATAAATGTTTGGAAACATATCTCCGTTGTTTCATCACTGGCAAACAAAACAAATGGTCTCAGTGGCTACACCTGGCAGAATGGTGGTACAATACCACCGATCATACTTCAGCTAAA

Ace file of the UniGene sp_v3.0_unigene162630

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Polyprotein (Fragment) n=1 Tax=Ananas comosus RepID=B4YF15_ANACO	-	-	5.0e-32	52%
FL-Next	tr=Polyprotein; Primula vulgaris.	-	-	0.0	54%

Source	Gene names
Sma3	LOC_Os10g28310; LOC_Os11g45000; LOC_Os12g17360; MtrDRAFT_AC150244g37v2; OSJNBa0022B03.13; OSJNBa0053F13.6; OSJNBa0087O24.13; Os05g0263200; Os06g0493000; Os09g0135100; Os09g0491900; Os10g0419000; Os12g0450200; OsJ_21419; T9I1.13; VITISV_001568; VITISV_0118

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	General substrate transporter	IPR005828	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Zinc finger, H2C2-type, histone UAS binding	IPR015416	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5X2S4

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 260 and 260, Distance to subject end: 176 aas, your sequence is shorter than subject: 125 - 1359

Fln protein: KIFVVVDRLTTYAHFMAIKKADTTKQITDVFCKNIYKLHGFPKDIVSDRDAKFKGNFWKDFCHQARISLNISSAYHPQTDGQTEVxxKCLETYLRCFITGKQNKWSQWLHLAEWWYNTTDHTSAK

Protein Length: 126

Fln nts: ACAAGATATTTGTCGTAGTCGACAGACTCACTACATATGCCCACTTTATGGCAATAAAAAAAGCTGACACAACTAAGCAAATAACGGATGTGTTTTGTAAAAACATTTACAAATTACATGGTTTTCCCAAGGACATTGTCAGTGACAGAGACGCAAAATTTAAAGGCAATTTTTGGAAAGATTTCTGCCACCAAGCAAGAATATCTCTCAACATAAGTTCGGCTTATCACCCCCAAACAGATGGTCAAACTGAAGTTxxxxxxAAATGTTTGGAAACATATCTCCGTTGTTTCATCACTGGCAAACAAAACAAATGGTCTCAGTGGCTACACCTGGCAGAATGGTGGTACAATACCACCGATCATACTTCAGCTAAA

Fln Alignment:

HA8LWWM01EB9J8___IFVVVDRLTTYAHFMAIKKADTTKQITDVFCKNIYKLHGFPKDIVSDRDAKFKGNFWKDFCHQARISLNISSAYHPQTDGQTEVVNKCLETYLRCFITGKQNKWSQWLHLAEWWYNTTDHTSAK
A5X2S4________________IWVVVDRLTKYAHFIPLKHPFGAKELANEFLQNIFKLHGLPKKIISDRDTIFTSDFWKELFHLLGTKLLLSTAFHPQTDGQTEIVNKSLETYLRCYTSQYPKNWAKWIYLAEFWYNSTTHTSIK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain