SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene162595

Length: 365 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene162595
AAGGTCAAGGACAGTCTGCAAGGAATTCCCGAAGAGGAATTCAATAGCAAGGACTACGAAGTACTTTGCAGTGGCCAGGAATACGCAATACTTTACACGACTGTTTTCTCGATGTGCACGCAAAAACCTCCGCACAATTGGTCTCGTCAACTCTATGACAGATACAGGGAGTCTTTTGAAGAGTACATCACTTCAGTTGTGAGTTATTTCCGGTTTTCTTACATGATGGCTTTAAATTCGCTGGTTATGGATGATTGTATTTTTTTAGTTTGATCAAAAGTCCTTCTACGTTTTCTGTTATATTTAAATCATTTTAACTATACTTAGAATTTAAAATTCCTATTGAAATCTGACAAGCTATCATG

Ace file of the UniGene sp_v3.0_unigene162595 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Plastid CUL1 n=1 Tax=Hevea brasiliensis RepID=D8V3L8_HEVBR	-	-	2.0e-15	56%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	61%

Source	Gene names
Sma3	MICPUN_106836; OJ1504_G04.11; Os05g0149600; OsI_01951;

Source	GOs	Term	Type	Identity
Sma3	cullin-RING ubiquitin ligase complex	GO:0031461	Cellular Component	-
Sma3	ubiquitin protein ligase binding	GO:0031625	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cullin, N-terminal	IPR001373	-	-
Sma3	Winged helix-turn-helix transcription repressor DNA-binding	IPR011991	-	-
Sma3	Cullin, conserved site	IPR016157	-	-
Sma3	Cullin homology	IPR016158	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G02570.1	ATCUL1, CUL1, AXR6 cullin 1 chr4:1129315-1133435 FORWARD LENGTH=738	7.0e-17	52%
RefSeq	Arabidopsis thaliana	NP_001190661.1	cullin 1 [Arabidopsis thaliana]	9.0e-17	52%
RefSeq	Populus trichocarpa	XP_002314453.1	predicted protein [Populus trichocarpa]	3.0e-19	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NR74

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 174 aas, your sequence is shorter than subject: 91 - 310

Fln protein: KVKDSLQGIPEEEFNSKDYEVLCSGQEYAILYTTVFSMCTQKPPHNWSRQLYDRYRESFEEYITSVVSYFRFSYMMALNSLVMDDCIFLV*

Protein Length: 92

Fln nts: AAGGTCAAGGACAGTCTGCAAGGAATTCCCGAAGAGGAATTCAATAGCAAGGACTACGAAGTACTTTGCAGTGGCCAGGAATACGCAATACTTTACACGACTGTTTTCTCGATGTGCACGCAAAAACCTCCGCACAATTGGTCTCGTCAACTCTATGACAGATACAGGGAGTCTTTTGAAGAGTACATCACTTCAGTTGTGAGTTATTTCCGGTTTTCTTACATGATGGCTTTAAATTCGCTGGTTATGGATGATTGTATTTTTTTAGTTTGATCAAAAGTCCTTCTACGTTTTCTGTTATATTTAAATCATTTTAACTATACTTAGAATTTAAAATTCCTATTGAAATCTGACAAGCTATCATG

Fln Alignment:

HA8LWWM01BWQ2G___KVKDSLQGIPEEEFNSKDYEVLCSGQEYAILYTTVFSMCTQKPPHNWSRQLYDRYRESFEEYITSVV
A9NR74________________KLKNILEGISEEQFNS---------EEYMRFYETVYKMCTQKPPHDYSQQLYDRYRESFEEYITSMV

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain