SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene162585

Length: 273 nt

UniGene Fasta

>sp_v3.0_unigene162585
ACGATGGTCACATGGTACTCCAGCTTTCTCCTCGCATCTTTGTGGAAATGGAATGGTGTCCAGCATACCACTTACAGGAAACTTGCCCAGAGCATTTATGGAACAAAAGGTTATTGGGCAGTTACTTTCTTCCAGCAATTGGCATCTTTAGGCAACAACATTGCTATACAAATTGCTGCTGGTAGCAGCCTCAAGGCCATTTACAAACATTATCACAACAGCGGTAATCTTACATTGCAAGAATTCATCATTCTGTTTGGAGTGTTTGAATTG

Ace file of the UniGene sp_v3.0_unigene162585

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Proline transporter (Fragment) n=1 Tax=Populus trichocarpa RepID=B9H8I0_POPTR	-	-	7.0e-34	72%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	35%

Source	Gene names
Sma3	GSVIVT00023863001; LOC_Os10g27980; Os10g0415100; OsI_33565; OsI_33567; OsJ_31515; POPTRDRAFT_205711; RCOM_0992260;

Source	GOs	Term	Type	e value	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	K Homology domain	IPR004087	-	-
Sma3	K Homology domain, type 1	IPR004088	-	-
Sma3	Amino acid transporter, transmembrane	IPR013057	-	-
Sma3		IPR018111	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002307630.1	proline transporter, partial [Populus trichocarpa]	5.00264e-43	72%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P182

Fln msg: Distance to subject end: 81 aas, your sequence is shorter than subject: 91 - 247

Fln protein: TMVTWYSSFLLASLWKWNGVQHTTYRKLAQSIYGTKGYWAVTFFQQLASLGNNIAIQIAAGSSLKAIYKHYHNSGNLTLQEFIILFGVFEL

Protein Length: 92

Fln nts: ACGATGGTCACATGGTACTCCAGCTTTCTCCTCGCATCTTTGTGGAAATGGAATGGTGTCCAGCATACCACTTACAGGAAACTTGCCCAGAGCATTTATGGAACAAAAGGTTATTGGGCAGTTACTTTCTTCCAGCAATTGGCATCTTTAGGCAACAACATTGCTATACAAATTGCTGCTGGTAGCAGCCTCAAGGCCATTTACAAACATTATCACAACAGCGGTAATCTTACATTGCAAGAATTCATCATTCTGTTTGGAGTGTTTGAATTG

Fln Alignment:

HA8LWWM01CMHI0___MVTWYSSFLLASLWKWNGVQHTTYRKLAQSIYGTKGYWAVTFFQQLASLGNNIAIQIAAGSSLKAIYKHYHNSGNLTLQEFIILFGV
A9P182________________LISFYANYLLARLHQIDGLRHIRYRDLAGYIYGDNMYYFTWALQYINLFMSNVGYIILAGEAMKAIYTFYDNEGILKLPYCITITGI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain