SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene162571

Length: 331 nt

UniGene Fasta

>sp_v3.0_unigene162571
ATAGTTTGGCCAGCATTGCGATGTCATATGGCACAACTGTTACAGATCTCGTGGATGTGAATTCCTTGGGAAGCTTCCAGATTGCAGCAGGAGACATTATTGCAATACCACTGGCAGCCTGCTCATCAGACAATTTGAATTTGCCTTCAAATAGTGATCTACTTGTAGCAAATGGAAGCTATGCTGTTACTGCTGATCATTGTGTGCAATGCAGCTGTGGGCCAAATGACTTGAACCTATATTGTGCACCATCCCTTCTGGCAAGATCATGCCCTGGCATGCGATGCAAGGGCAGTAACCTTTTGATTGGGGATGTCATTGAACAACAAAC

Ace file of the UniGene sp_v3.0_unigene162571

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam01476, LysM, LysM domain	-	-	4.0e-05	41%
FL-Next	Isoform 2 of LysM domain-containing GPI-anchored protein 1 OS=Arabidopsis thaliana GN=At1g21880	-	-	0.0	49%
Sma3	Erwinia induced protein 1	-	-	3.112e-17	-

Source	Gene names
Sma3	At1g21880; GSVIVT00015378001; GSVIVT00017669001; OJ1163_C07.33; Os09g0452200; OsI_09086; OsI_22104; OsI_31607; OsJ_08523; OsJ_20541; OsJ_29593; P0488D02.10; P0664C05.26; POPTRDRAFT_209872; POPTRDRAFT_643636; RCOM_0199830; RCOM_1032080; T26F17.10; T26F17_5

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	anchored to plasma membrane	GO:0046658	Cellular Component	-
Sma3	cell wall macromolecule catabolic process	GO:0016998	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidoglycan-binding Lysin subgroup	IPR002482	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	Peptidoglycan-binding lysin domain	IPR018392	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G21880.2	LYM1 lysm domain GPI-anchored protein 1 precursor chr1:7680689-7682526 FORWARD LENGTH=416	1.0e-30	49%
RefSeq	Arabidopsis thaliana	NP_849697.1	LysM domain-containing GPI-anchored protein 1 [Arabidopsis thaliana]	9.0e-31	49%
RefSeq	Populus trichocarpa	XP_002307431.1	predicted protein, partial [Populus trichocarpa]	7.0e-36	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q93ZH0-2

Fln msg: Distance to subject end: 22 aas, your sequence is shorter than subject: 109 - 316

Fln protein: SLASIAMSYGTTVTDLVDVNSLGSFQIAAGDIIAIPLAACSSDNLNLPSNSDLLVANGSYAVTADHCVQCSCGPNDLNLYCAPSLLARSCPGMRCKGSNLLIGDVIEQQ

Protein Length: 110

Fln nts: ATAGTTTGGCCAGCATTGCGATGTCATATGGCACAACTGTTACAGATCTCGTGGATGTGAATTCCTTGGGAAGCTTCCAGATTGCAGCAGGAGACATTATTGCAATACCACTGGCAGCCTGCTCATCAGACAATTTGAATTTGCCTTCAAATAGTGATCTACTTGTAGCAAATGGAAGCTATGCTGTTACTGCTGATCATTGTGTGCAATGCAGCTGTGGGCCAAATGACTTGAACCTATATTGTGCACCATCCCTTCTGGCAAGATCATGCCCTGGCATGCGATGCAAGGGCAGTAACCTTTTGATTGGGGATGTCATTGAACAACAAAC

Fln Alignment:

HA8LWWM01AISXW___SLASIAMSYGTTVTDLVDVNSLGSFQIAAGDIIAIPLAACXXXXXXXXXXXXXXVANGSYAVTADHCVQCSCGPNDLNLYCAPSLLARSCPGMRCKGSNLLIGDVIEQQ
Q93ZH0-2______________TLVGIARRYSTTITDLMNVNAMGAPDVSSGDILAVPLSACASKFPRYASDFGLIVPNGSYALAAGHCVQCSCALGSRNLYCEPASLAVSCSSMQCRNSNLMLGNITVQQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain