SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene162565

Length: 137 nt

UniGene Fasta

>sp_v3.0_unigene162565
TATCTCAACATGCTAATCACACTTTAAGGCTTTTCAAGATGGAAGATGTTAGCATGGGGATGTGGGTTGAACAATTCAATGCTTCTTCACGTGTTCAGTACTCTCATAACTCGGAAATTCTAGCCAATATGGATGCA

Ace file of the UniGene sp_v3.0_unigene162565

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transferase, transferring glycosyl groups, putative (EC:2.4.1.134)	-	-	9.0e-10	80%
FL-Next	sp=Probable beta-1,3-galactosyltransferase 20; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	72%
Sma3	Galactosyltransferase family	-	-	7.824e-09	-

Source	ECs	Term	Type	e value	Identity
Sma3	Galactosylxylosylprotein 3-beta-galactosyltransferase.	EC:2.4.1.134	-	8.209e-07	-

Source	KEGGs	Term	e value	Identity
Sma3	Glycosaminoglycan biosynthesis - chondroitin sulfate	00532	8.209e-07	%
Sma3	Glycosaminoglycan biosynthesis - heparan sulfate	00534	8.209e-07	%
Sma3	Metabolic pathways	01100	8.209e-07	%

Source	Gene names
Sma3	At4g21060; B3GALT20; GSVIVT00028354001; GSVIVT00028951001; LOC_Os12g41956; Os08g0130900; OsI_27704; OsI_39103; OsJ_25935; OsJ_36860; POPTRDRAFT_416975; POPTRDRAFT_808299; RCOM_1288390; RCOM_1513100; S250_18C08.28; T13K14.220; VITISV_015322;

Source	GOs	Term	Type	Identity
Sma3	Golgi membrane	GO:0000139	Cellular Component	-
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	galactosyltransferase activity	GO:0008378	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	protein glycosylation	GO:0006486	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Galectin, carbohydrate recognition domain	IPR001079	-	-
Sma3	Glycosyl transferase, family 31	IPR002659	-	-
Sma3	Ureohydrolase	IPR006035	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G21060.1	Galactosyltransferase family protein chr4:11240730-11244860 FORWARD LENGTH=741	2.0e-11	72%
RefSeq	Arabidopsis thaliana	NP_001154260.1	Galactosyltransferase family protein [Arabidopsis thaliana]	3.0e-11	72%
RefSeq	Populus trichocarpa	XP_002322528.1	predicted protein [Populus trichocarpa]	2.0e-13	77%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: A7XDQ9

Fln msg: Distance to subject end: 32 aas, your sequence is shorter than subject: 45 - 684

Fln protein: SQHANHTLRLFKMEDVSMGMWVEQFNASSRVQYSHNSEILANMDA

Protein Length: 46

Fln nts: TATCTCAACATGCTAATCACACTTTAAGGCTTTTCAAGATGGAAGATGTTAGCATGGGGATGTGGGTTGAACAATTCAATGCTTCTTCACGTGTTCAGTACTCTCATAACTCGGAAATTCTAGCCAATATGGATGCA

Fln Alignment:

HA8LWWM01BA6SM___SQHANHTLRLFKMEDVSMGMWVEQFNASSR-VQYSHN
A7XDQ9________________SQNSRHKLRLFKMEDVSMGLWVEQFNASMQPVEYSHS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain