SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene162543

Length: 346 nt

UniGene Fasta

>sp_v3.0_unigene162543
ATCCCGACTACGCTGTATACCTGAAAGGCCGATGCCCGACCCCCAATCCGGACCCCAACGAAGTCCTCTATGCACGAAACGATCGCGTGACGCCCATGAAATTGGATAACAATTATTTCAAGAACTTGATTAAGCACGAGGGACTGCTGCTCGTCGATCAGGGCCTGCTCTCGGATTCCAGAACTAGGCCCTATGTCACTAAAATGGCCCAAGATAACAACTATTTCTTCGCTCAATTCTCAAGAGCTCTCACTATCCTCTCAGAGAACAACCCTCTTACTGGCAGCGACGGAGAAATCAGAAACCATTGCCGTTTTGTGAATCGGCCCTGAAACCTGTATTCTTG

Ace file of the UniGene sp_v3.0_unigene162543

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	peroxidase [Mirabilis jalapa]	-	-	4.0e-39	70%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Sma3	Secretory peroxidase	-	-	1.646e-14	-

Source	ECs	Term	Type	e value	Identity
Sma3	Peroxidase.	EC:1.11.1.7	-	1.585e-17	-

Source	KEGGs	Term	e value	Identity
Sma3	Phenylalanine metabolism	00360	1.585e-17	%
Sma3	Methane metabolism	00680	1.585e-17	%
Sma3	Phenylpropanoid biosynthesis	00940	1.585e-17	%
Sma3	Biosynthesis of phenylpropanoids	01061	1.585e-17	%
Sma3	Metabolic pathways	01100	1.585e-17	%
Sma3	Biosynthesis of secondary metabolites	01110	1.585e-17	%

Source	Gene names
Sma3	At2g37130; CP; GSVIVT00010753001; GSVIVT00023167001; Os07g0694300; OsI_27449; OsJ_11374; P0627E10.8; P21; PER; PER21; PER42; PO1; PO2; POD6; POPTRDRAFT_589413; POPTRDRAFT_647567; Prx2; Prx2b; RCOM_0904610; RCOM_1357540; T2N18.11; VITISV_039918; prx; prx11

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	peroxidase activity	GO:0004601	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	calcium ion binding	GO:0005509	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-
Sma3	hydrogen peroxide catabolic process	GO:0042744	Biological Process	-
Sma3	rhythmic process	GO:0048511	Biological Process	-
Sma3	defense response to fungus	GO:0050832	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Plant peroxidase	IPR000823	-	-
Sma3	Haem peroxidase, plant/fungal/bacterial	IPR002016	-	-
Sma3	Plant ascorbate peroxidase	IPR002207	-	-
Sma3	Peroxidases heam-ligand binding site	IPR019793	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G37130.1	Peroxidase superfamily protein chr2:15598225-15600004 REVERSE LENGTH=327	1.4013e-45	63%
RefSeq	Arabidopsis thaliana	NP_001118461.1	peroxidase [Arabidopsis thaliana]	0.0	63%
RefSeq	Populus trichocarpa	XP_002326343.1	predicted protein [Populus trichocarpa]	0.0	71%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NNP1

Fln msg: your sequence is shorter than subject: 110 - 342

Fln protein: PDYAVYLKGRCPTPNPDPNEVLYARNDRVTPMKLDNNYFKNLIKHEGLLLVDQGLLSDSRTRPYVTKMAQDNNYFFAQFSRALTILSENNPLTGSDGEIRNHCRFVNRP*

Protein Length: 111

Fln nts: ATCCCGACTACGCTGTATACCTGAAAGGCCGATGCCCGACCCCCAATCCGGACCCCAACGAAGTCCTCTATGCACGAAACGATCGCGTGACGCCCATGAAATTGGATAACAATTATTTCAAGAACTTGATTAAGCACGAGGGACTGCTGCTCGTCGATCAGGGCCTGCTCTCGGATTCCAGAACTAGGCCCTATGTCACTAAAATGGCCCAAGATAACAACTATTTCTTCGCTCAATTCTCAAGAGCTCTCACTATCCTCTCAGAGAACAACCCTCTTACTGGCAGCGACGGAGAAATCAGAAACCATTGCCGTTTTGTGAATCGGCCCTGA___AACCTGTATTCTTG

Fln Alignment:

HA8LWWM01AKZLI___PDYAVYLKGRCPTPNPDPNEVLYARNDRVTPMKLDNNYFKNLIKHEGLLLVDQGLLSDSRTRPYVTKMAQDNNYFFAQFSRALTILSENNPLTGSDGEIRNHCRFVNR
A9NNP1________________PGHVEHMKHKCPDAIPNPKAVQYVRNDRGTPMKLDNNYYVNLMNNKGLLIVDQQLYADSRTRPYVKKMAKSQDYFFKYFARALTILSENNPLTGNRGEIRRQCSLRNK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain