SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene162532

Length: 489 nt

UniGene Fasta

>sp_v3.0_unigene162532
CACAGTGTGGAAATTATACCACATGCACTGAGGATTTACAGGCAGTTAATCCTCAGACTTGTCAATGTGCAACGCCGTATGTGGGCACCTTGGTCATCAGATCTCCCTCCTTTTCGAGTTTGACGAATGCTACCAGATTTCACAAGCTAGAGAATTCTCTATGGACCCAACTAAACTTGACAAACGGGTTAGTATATATCTGTTGCATGTTGTTCGATGCCTACGGGCAGCTGAATATACAAGTACGGCTTTTCCCACCGCACGGGAGGAAGGATTTTCAACGATCGGAAATCCTAAAGATTGGTTTAGCTTTCAGCAATCAAACGTACATTCCTCCAGCTGGATTTATACCCTACTATTTCAAACCAGCAGTTTACAACTTTCTGCTCGAGGGGTCGAAGGGTTTAAGTTCAGGGGCAATTACTGGAATAGCAGTTGGTGCCGCAGTGTTGGTCCTTGCCATTATTGCCCTTGCGATTTACGCATTAC

Ace file of the UniGene sp_v3.0_unigene162532

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana] dbj\|BAC42504.1\| unknown protein [Arabidopsis thaliana] gb\|ACN59279.1\| leucine-rich repeat receptor-like protein kinase [Arabidopsis thaliana] gb\|AEE36273.1\| leucine-rich repeat protein	-	-	6.0e-24	47%
FL-Next	sp=Probable leucine-rich repeat receptor-like protein kinase At5g49770; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	33%

Source	Gene names
Sma3	AT1G79620; At1g79620; At1g79620/F20B17_5; GSVIVT00033612001; LOC_Os03g21230; LRR-RLK; Os03g0329700; OsI_11410; OsJ_10704; POPTRDRAFT_254628; POPTRDRAFT_916020; RCOM_1323570;

Source	GOs	Term	Type	Identity
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G79620.1	Leucine-rich repeat protein kinase family protein chr1:29957633-29962174 REVERSE LENGTH=971	1.0e-28	47%
RefSeq	Arabidopsis thaliana	NP_178080.2	leucine-rich repeat protein kinase-like protein [Arabidopsis thaliana]	2.0e-28	47%
RefSeq	Populus trichocarpa	XP_002326254.1	predicted protein [Populus trichocarpa]	8.0e-31	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9LT96

Fln msg: Distance to subject end: 361 aas, your sequence is shorter than subject: 162 - 946

Fln protein: QCGNYTTCTEDLQAVNPQTCQCATPYVGTLVIRSPSFSSLTNATRFHKLENSLWTQLNLTNGLVYICCMLFDAYGQLNIQVRLFPPHGRKDFQRSEILKIGLAFSNQTYIPPAGFIPYYFKPAVYNFLLEGSKGLSSGAITGIAVGAAVLVLAIIALAIYAL

Protein Length: 163

Fln nts: CACAGTGTGGAAATTATACCACATGCACTGAGGATTTACAGGCAGTTAATCCTCAGACTTGTCAATGTGCAACGCCGTATGTGGGCACCTTGGTCATCAGATCTCCCTCCTTTTCGAGTTTGACGAATGCTACCAGATTTCACAAGCTAGAGAATTCTCTATGGACCCAACTAAACTTGACAAACGGGTTAGTATATATCTGTTGCATGTTGTTCGATGCCTACGGGCAGCTGAATATACAAGTACGGCTTTTCCCACCGCACGGGAGGAAGGATTTTCAACGATCGGAAATCCTAAAGATTGGTTTAGCTTTCAGCAATCAAACGTACATTCCTCCAGCTGGATTTATACCCTACTATTTCAAACCAGCAGTTTACAACTTTCTGCTCGAGGGGTCGAAGGGTTTAAGTTCAGGGGCAATTACTGGAATAGCAGTTGGTGCCGCAGTGTTGGTCCTTGCCATTATTGCCCTTGCGATTTACGCATTAC

Fln Alignment:

HA8LWWM01EUMXV___QCGNYTTCTEDLQAVNPQTCQCATPYVGTLVIRSPSFSSLTNATRFHKLENSLWTQLNLTNGLVYICCMLFDAYGQ------LNIQVRLFPPHGRKDFQRSEILKIGLAFSNQTYIPPAGFIPYYFKPAVYNFL--LEGSKGLS
Q9LT96________________KCGNH--CGKGKEP--NQGCHCVYPLTGVFTLRSPSFSGFSNNSNFLKFGESLMTFFK--NGKYPVDSVAMRNISENPTDYHLLINLLIF-PSGRDRFNQTEMDSINSAFTIQDYKPPPRFGPYIFVADQYKTFSDLEDSKTVS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain