SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene162446

Length: 526 nt

UniGene Fasta

>sp_v3.0_unigene162446
ATAGCCGTACCCGGGAACAATTGCACGAGACCACTTTGTGTATGCAGGAACAATGGATACGATTGGGATTAAGGTACCCATTACAGGTTTCATGGCGACCTTGATGGTGGTAATGGTGGCGTTATGCGTTGGCGCAGGTGCAGCAGAAACAGAGATAAAGCCCGTATCTTTTATTTTCGGGGATTCTTTGTCAGATGTTGGAAACAACAATTATCTGCCCCAGAGTCTGGCGAAGGCCAATTATGCATGGTATGGCATTGACTATGGCAACGGAACGGCTACTGGGAGATACACCAATGGGCGAACCGTTTGTGATATAGTTGCTGAAGAAATAGGTCTTATTTCTACGCTGAATTTTTTTCATGGGGGTTCTCCTTCACCTGCACCATCGCCATCTCCAGCTTCATCAATACGGTTATAGAAGACCTATATAATATAAGCTGATTGGAAATTTGGAAGTCTTGCTTACCCATTCCAGAGGAAATGATAATTCCTTTAAGATTGTAATCTGCATTTATATTGAACC

Ace file of the UniGene sp_v3.0_unigene162446

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Sma3	Zinc finger protein, putative	-	-	2.083e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on ester bonds, Carboxylic ester hydrolases.	EC:3.1.1.-	-	5.527e-12	-

Source	KEGGs	Term	e value	Identity
Sma3	Ascorbate and aldarate metabolism	00053	5.527e-12	%
Sma3	Bisphenol degradation	00363	5.527e-12	%
Sma3	Glycerophospholipid metabolism	00564	5.527e-12	%
Sma3	Toluene degradation	00623	5.527e-12	%
Sma3	Aminobenzoate degradation	00627	5.527e-12	%
Sma3	Retinol metabolism	00830	5.527e-12	%
Sma3	Tropane, piperidine and pyridine alkaloid biosynthesis	00960	5.527e-12	%

Source	Gene names
Sma3	At1g33811; At1g71691; At1g74460; At2g23540; At5g41890; F14M2.7; F14O23.4; F1M20.14; F26A9.7; F26B6.19; GSVIVT00016326001; GSVIVT00021901001; GSVIVT00035786001; K16L22.18; MtrDRAFT_AC155282g8v2; Os02g0732800; Os05g0419800; Os06g0229400; Os06g0257600; OsI_0

Source	GOs	Term	Type	e value	Identity
Sma3	hydrolase activity, acting on ester bonds	GO:0016788	Molecular Function	0.0	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Lipase, GDSL	IPR001087	-	0.0	-
Sma3	Lipase, GDSL, active site	IPR008265	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G74460.1	GDSL-like Lipase/Acylhydrolase superfamily protein chr1:27988150-27989765 REVERSE LENGTH=366	2.0e-21	66%
RefSeq	Arabidopsis thaliana	NP_177586.1	GDSL esterase/lipase [Arabidopsis thaliana]	2.0e-21	66%
RefSeq	Populus trichocarpa	XP_002318602.1	predicted protein [Populus trichocarpa]	2.0e-21	56%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXM8

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 221 aas, your sequence is shorter than subject: 123 - 377

Fln protein: MDTIGIKVPITGFMATLMVVMVALCVGAGAAETEIKPVSFIFGDSLSDVGNNNYLPQSLAKANYAWYGIDYGNGTATGRYTNGRTVCDIVAEEIGLISTLNFFHGGSPSPAPSPSPASSIRL*

Protein Length: 124

Fln nts: ATAGCCGTACCCGGGAACAATTGCACGAGACCACTTTGTGTATGCAGGAACA_-_ATGGATACGATTGGGATTAAGGTACCCATTACAGGTTTCATGGCGACCTTGATGGTGGTAATGGTGGCGTTATGCGTTGGCGCAGGTGCAGCAGAAACAGAGATAAAGCCCGTATCTTTTATTTTCGGGGATTCTTTGTCAGATGTTGGAAACAACAATTATCTGCCCCAGAGTCTGGCGAAGGCCAATTATGCATGGTATGGCATTGACTATGGCAACGGAACGGCTACTGGGAGATACACCAATGGGCGAACCGTTTGTGATATAGTTGCTGAAGAAATAGGTCTTATTTCTACGCTGAATTTTTTTCATGGGGGTTCTCCTTCACCTGCACCATCGCCATCTCCAGCTTCATCAATACGGTTATAGAAGACCTATATAATATAAGCTGATTGGAAATTTGGAAGTCTTGCTTACCCATTCCAGAGGAAATGATAATTCCTTTAAGATTGTAATCTGCATTTATATTGAACC

Fln Alignment:

HA8LWWM01BY7T6___MDTIGIKVPITGFMATLMVVMVALCVGAGAAETEIKPVSFIFGDSLSDVGNNNYLPQSLAKANYAWYGIDYGNGTATGRYTNGRTVCDIVAEEIGL
A9NXM8________________MERIGIEALSTGFMAILMVV--ALYVGAGAAATEIKPVSFIFGDSLSDVGNNNHLPRSLAKSNYPWYGIDFGNGLPTGRYTNGRTICDIVAEKTGL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain