SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene162388

Length: 334 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene162388
ACCGCTGCTCCCGCTCATCATCTCGCCTGAACAATCAGGATATGTGCAGGGCCGTCAAATTACAGATGGAATAATCCTAACTCATGAAATTATACACTCCCTCACTAGAACCAAGAAGCCAAGTATGTCTGCTAAAACTTGATTTATCCAAGGCCTTTGATAGTCTAAGTTGGGCATACATTCAAAAAATCCTAATAGCTTTCGGCTTTGCGCACTCTTGGGTTTAGATGGATCTACAACATGCTATCTTCAGTCTTCTACTCTGTTTTAATCAATGGAATACCCTCAGCCACATACAGACCCTCAAGAGGCATAAGACAAGGAGATCCCTTGT

Ace file of the UniGene sp_v3.0_unigene162388 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Reverse transcriptase (Fragment) n=1 Tax=Pinus strobus RepID=O65877_PINST	-	-	9.0e-25	66%
FL-Next	tr=Retrotransposon protein, putative, unclassified; Oryza sativa subsp. japonica (Rice).	-	-	0.0	46%

Source	Gene names
Sma3	reverse transcriptase;

Source	GOs	Term	Type	Identity
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Reverse transcriptase	IPR000477	-	0.0	-
Sma3		IPR015706	-	0.0	-

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: Q2QNX8

Fln msg: ERROR#3, very serious frame error, Overlapping hits, possible frame ERROR between 124 and 117, and possible frame ERROR between 224 and 229, Distance to subject end: 685 aas, your sequence is shorter than subject: 112 - 1188

Fln protein: PLLPLIISPEQSGYVQGRQITDGIILTHEIIHSLTRTKxxxxCLLKLDLSKAFDSLSWAYIQKILIAFGFAHSWxxRWIYNMLSSVFYSVLINGIPSATYRPSRGIRQGDPL

Protein Length: 113

Fln nts: ACCGCTGCTCCCGCTCATCATCTCGCCTGAACAATCAGGATATGTGCAGGGCCGTCAAATTACAGATGGAATAATCCTAACTCATGAAATTATACACTCCCTCACTAGAACCAAGxxxxxxxxxxxxTGTCTGCTAAAACTTGATTTATCCAAGGCCTTTGATAGTCTAAGTTGGGCATACATTCAAAAAATCCTAATAGCTTTCGGCTTTGCGCACTCTTGGxxxxxxAGATGGATCTACAACATGCTATCTTCAGTCTTCTACTCTGTTTTAATCAATGGAATACCCTCAGCCACATACAGACCCTCAAGAGGCATAAGACAAGGAGATCCCTTGT

Fln Alignment:

HA8LWWM01BV2Y3___PLLPLIISPEQSGYVQGRQITDGIILTHEIIHSLTRTKKPSSQVCLLKLDLSKAFDSLSWAYIQKILIAFGFAHSWVxxWIYNMLSSVFYSVLINGIPSATYRPSRGIRQGDPL
Q2QNX8________________PILDELISPNQSAFVPGRMITDNALIAFECFHSIQKNKKLSSATCAYKLDLSKAYDRVDWKFLEQSMYKLGFAHCWVxxWIMSCITSVRYSVKFNGTLLSTFAPSRGLRQGDPL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain