SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene162380

Length: 450 nt

UniGene Fasta

>sp_v3.0_unigene162380
GCAGCTTATCTGAAGAATGTGGTTGGTCTTCCAACAACTTTCAGTTTCCAGGCCCTGGAGACGGCCACGGGCGGCTTCAGCAAAGAGATTGGAAAGGGAGGGTTCGGCAAGGTATACCAAGGGATTTTGACGGATGGTACTCAAGTTGCAGTGAAATGTCTACTCGATCAGACGGGACAGGGACAGCGGGAATTTTGTGCGGAAATCGCCACCATATCGTCCCTCAATCATTCAAATCTCGTAACCTTGCGTGGTTTTTGTGCGCAAGGGTCCCATCGTATTCTGGTGTACGAATTCATGGCCAACGGGTCTCTGGATAGATGGCTGTTCGACTCAGACAAACGGCTGGATTGGAAGACTAGGTATTCCATCGCGCTCGACACTGCCCGGGGACTTGCGTACCTGCACGAAGAGTCACGACACGGGATTCTGCATCTGGATGTTAAACCT

Ace file of the UniGene sp_v3.0_unigene162380

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	S-receptor kinase, putative n=1 Tax=Ricinus communis RepID=B9RP41_RICCO	-	-	9.94922e-44	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	77%
Sma3	S-receptor kinase, putative	-	-	4.952e-16	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	5.845e-11	-
Sma3	[Myosin light-chain] kinase.	EC:2.7.11.18	-	8.492e-08	-

Source	Gene names
Sma3	17L07.5; AT4g00340; AT4g32300; A_IG005I10.19; A_TM018A10.18; At1g34300; At2g19130; At4g00970; At4g21410; At4g32300; At5g20050; At5g35370; B1099D03.51; B1423D04.25; CRK29; CRK41; DUPR11.18; F10M6.60; F14G9.24; F23M19.5; F5I10.19; F8B4.10; GSVIVT00000338001

Source	GOs	Term	Type	Identity
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	peptidoglycan-based cell wall	GO:0009274	Cellular Component	-
Sma3	cell surface	GO:0009986	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	thylakoid membrane	GO:0042651	Cellular Component	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	phospholipase C activity	GO:0004629	Molecular Function	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	plastoquinol--plastocyanin reductase activity	GO:0009496	Molecular Function	-
Sma3	2 iron, 2 sulfur cluster binding	GO:0051537	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	lipid metabolic process	GO:0006629	Biological Process	-
Sma3		GO:0007242	Biological Process	-
Sma3	peptidoglycan biosynthetic process	GO:0009252	Biological Process	-
Sma3	recognition of pollen	GO:0048544	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Serine/threonine dehydratase, pyridoxal-phosphate-binding site	IPR000634	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Phospholipase C, phosphatidylinositol-specific , X domain	IPR000909	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Glycosyl transferase, family 51	IPR001264	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3		IPR001899	-	-
Sma3	Aminotransferase, class-II, pyridoxal-phosphate binding site	IPR001917	-	-
Sma3	Thaumatin, pathogenesis-related	IPR001938	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Enolpyruvate transferase domain	IPR001986	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Glycoprotein D/GG/GX, Herpesvirus	IPR002896	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	PAN-1 domain	IPR003014	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3		IPR005806	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Cytochrome b6-f complex Fe-S subunit	IPR014909	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Rieske [2Fe-2S] iron-sulphur domain	IPR017941	-	-
Sma3	Thaumatin, conserved site	IPR017949	-	-
Sma3	Peptidase S26A, signal peptidase I, serine active site	IPR019756	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G32300.1	SD2-5 S-domain-2 5 chr4:15599970-15602435 FORWARD LENGTH=821	52%
RefSeq	Arabidopsis thaliana	NP_194957.2	protein S-DOMAIN-2 5 [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002317112.1	predicted protein [Populus trichocarpa]	56%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NM60

Fln msg: Distance to subject end: 192 aas, your sequence is shorter than subject: 150 - 431

Fln protein: AAYLKNVVGLPTTFSFQALETATGGFSKEIGKGGFGKVYQGILTDGTQVAVKCLLDQTGQGQREFCAEIATISSLNHSNLVTLRGFCAQGSHRILVYEFMANGSLDRWLFDSDKRLDWKTRYSIALDTARGLAYLHEESRHGILHLDVKP

Protein Length: 151

Fln nts: GCAGCTTATCTGAAGAATGTGGTTGGTCTTCCAACAACTTTCAGTTTCCAGGCCCTGGAGACGGCCACGGGCGGCTTCAGCAAAGAGATTGGAAAGGGAGGGTTCGGCAAGGTATACCAAGGGATTTTGACGGATGGTACTCAAGTTGCAGTGAAATGTCTACTCGATCAGACGGGACAGGGACAGCGGGAATTTTGTGCGGAAATCGCCACCATATCGTCCCTCAATCATTCAAATCTCGTAACCTTGCGTGGTTTTTGTGCGCAAGGGTCCCATCGTATTCTGGTGTACGAATTCATGGCCAACGGGTCTCTGGATAGATGGCTGTTCGACTCAGACAAACGGCTGGATTGGAAGACTAGGTATTCCATCGCGCTCGACACTGCCCGGGGACTTGCGTACCTGCACGAAGAGTCACGACACGGGATTCTGCATCTGGATGTTAAACCT

Fln Alignment:

HA8LWWM01AU2GC___YLKNVVGLPTTFSFQALETATGGFSKEIGKGGFGKVYQGILTDGTQVAVKCLLDQTGQGQREFCAEIATISSLNHSNLVTLRGFCAQGSHRILVYEFMANGSLDRWLFDSDKRLDWKTRYSIALDTARGLAYLHEESRHGILHLDVKP
A9NM60________________YLKNLTGLPAIFTYETIEIATGGFSKEIGKGGFGTVYEGILEDDTLVAVKCLVNESRQGQAEFCAEIGTTSSINHSNLVRLHGICVEGQHRILVYEFMANGSLDRWLFDSDKWLDWKTRYSIALDTARGLAYLHEESRLCILHLDVKP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain