SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene162341

Length: 457 nt

UniGene Fasta

>sp_v3.0_unigene162341
AAGAATTTTCCATATAAATTGCTCTTGGAATGCATGTGGTTATAGTTTTTTATCACTGTGTTCAGTGAAGCTTGGGGAAAGCATGTGTGAGACAGCAAGGGGTAAGCTGAGCTTGGGCACCAAAATAGTAACACAAGGTGGAGTTGAGAAAATGTTCAAGTCAAGCTTTAGTGTTGGTCATACAGAAAAGCTTTTGAAAACTTCACCCTGTTACTTGTCAACTAGCAGTTTCCCCGTGGTAGGGTTACTCTTCATATCAACAGAAAATGTAGCCTTTTGCAGTGAGCTTCCAATCTCCTTCACATCTTCTCAAGGACGGACTGCCTCCAGCTATTACAAGGTGGTTATACCTATTAGAGTAAGATCAGTGAACCTATACGAGAATATTAAGAAGGCTACCGAGAAGTATATTCAAATACAGACAGTTGATGATAACGAGTTCTGGTTCATGGCTTTC

Ace file of the UniGene sp_v3.0_unigene162341

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Unassigned protein	-	-	0.0	-
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Sma3	Chromosome undetermined scaffold_139, whole genome shotgun sequence	-	-	4.85e-39	-

Source	Gene names
Sma3	ACRE140; At5g08350; At5g13200; At5g23350; At5g23360; At5g23370; B1288B10.1; F8L15_80; GSVIVT00001475001; GSVIVT00001477001; GSVIVT00003089001; GSVIVT00003094001; GSVIVT00003099001; GSVIVT00003101001; GSVIVT00003104001; GSVIVT00003113001; GSVIVT00003114001

Source	InterPros	Term	Type	e value	Identity
Sma3	GRAM	IPR004182	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G23350.1	GRAM domain-containing protein / ABA-responsive protein-related chr5:7858545-7859387 REVERSE LENGTH=280	5.0e-37	48%
RefSeq	Arabidopsis thaliana	NP_197726.1	GEM-like protein 6 [Arabidopsis thaliana]	7.0e-37	48%
RefSeq	Populus trichocarpa	XP_002307149.1	predicted protein [Populus trichocarpa]	0.0	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9P072

Fln msg: Distance to subject end: 17 aas, your sequence is shorter than subject: 152 - 227

Fln protein: RIFHINCSWNACGYSFLSLCSVKLGESMCETARGKLSLGTKIVTQGGVEKMFKSSFSVGHTEKLLKTSPCYLSTSSFPVVGLLFISTENVAFCSELPISFTSSQGRTASSYYKVVIPIRVRSVNLYENIKKATEKYIQIQTVDDNEFWFMAF

Protein Length: 153

Fln nts: AAGAATTTTCCATATAAATTGCTCTTGGAATGCATGTGGTTATAGTTTTTTATCACTGTGTTCAGTGAAGCTTGGGGAAAGCATGTGTGAGACAGCAAGGGGTAAGCTGAGCTTGGGCACCAAAATAGTAACACAAGGTGGAGTTGAGAAAATGTTCAAGTCAAGCTTTAGTGTTGGTCATACAGAAAAGCTTTTGAAAACTTCACCCTGTTACTTGTCAACTAGCAGTTTCCCCGTGGTAGGGTTACTCTTCATATCAACAGAAAATGTAGCCTTTTGCAGTGAGCTTCCAATCTCCTTCACATCTTCTCAAGGACGGACTGCCTCCAGCTATTACAAGGTGGTTATACCTATTAGAGTAAGATCAGTGAACCTATACGAGAATATTAAGAAGGCTACCGAGAAGTATATTCAAATACAGACAGTTGATGATAACGAGTTCTGGTTCATGGCTTTC

Fln Alignment:

HA8LWWM01AYCJ7___VKLGESMCETARGKLSLGTKIVTQGGVEKMFKSSFSVGHTEKLLKTSPCYLSTSSFPVVGLLFISTENVAFCSELPISFTSSQGRTASSYYKVVIPI-RVRSVNLYENIKKATEKYIQIQTVDDNEFWFMAF
A9P072________________MKLGESMSETVWGKLSLGTKIVAQGGVEKMFKSSFIVGPTEKLLKTSACYLSTSSDPVAGLLFISTEKVAFCSDRSLSFTSSQGENASSYYRVVIPLGRVRSVNLCENVEKATEKYIQIQTVDDHDFWFMAF

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain