SustainPineDB

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Assembly info
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SSRs
Descriptions
GOs
ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene162334

Length: 377 nt

UniGene Fasta

>sp_v3.0_unigene162334
ATCGGGAGGATTCAGAAACCGAAGCACTGATATGGGATCTAAGGATCATCTGGATGCAGGGGCTGTATTTGTCTTGGAATCCAAAGGGAATTGGTTTCATGCCGGTTACCATTTGACTACATCCATAGCAGCACCGGCCCTGCTGAGTCTGCCATTTGCATTTGCAGCATTGGGATGGTTTGCGGGGATTTTGTGTCTCATTGTTGGAGCCGCCGTCACATTTTATTCATACAATCTCCTATCCTTGGTGTTGGAGCGCCTGGAATCAGAAGGAATCGCCACCTCCGTTTCAGAGACCTGGCCAGAGACATTCTAGGACCCAAATGGGCTCGTTTGACTGTGGCACCGATCCAATTCGCAGTTTGTTTGGGTACTGT

Ace file of the UniGene sp_v3.0_unigene162334

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transmembrane amino acid transporter [Arabidopsis thaliana] gb\|AEE28264.1\| transmembrane amino acid transporter [Arabidopsis thaliana]	-	-	4.0e-17	39%
FL-Next	sp=GABA transporter 1; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	60%
Sma3	Proline transporter	-	-	6.353e-19	-

Source	Gene names
Sma3	At5g41800; GSVIVT00002452001; GSVIVT00022097001; GSVIVT00034975001; GSVIVT00034976001; GSVIVT00034978001; OJ1007_H05.2; OJ1402_H07.33; Os01g0857400; Os05g0586500; OsI_02902; OsI_04494; OsI_21177; OsJ_02643; OsJ_04127; OsJ_19717; P0683F02.10; PHYPADRAFT_15

Source	GOs	Term	Type	e value	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	0.0	-
Sma3	integral to membrane	GO:0016021	Cellular Component	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Amino acid transporter, transmembrane	IPR013057	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G08230.2	Transmembrane amino acid transporter family protein chr1:2583715-2586700 REVERSE LENGTH=451	3.0e-19	60%
RefSeq	Arabidopsis thaliana	NP_001077487.1	transmembrane amino acid transporter [Arabidopsis thaliana]	4.0e-19	60%
RefSeq	Populus trichocarpa	XP_002311042.1	proline transporter [Populus trichocarpa]	1.0e-19	66%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: F4HW02

Fln msg: Separated hits, possible frame ERROR between 226 and 274, Distance to subject end: 324 aas, atg_distance in limit (1-15): atg_distance = 2, your sequence is shorter than subject: 115 - 451

Fln protein: MGSKDHLDAGAVFVLESKGNWFHAGYHLTTSIAAPALLSLPFAFAALGWFAGILCLIVGAAVTFxxxxxxxxxxxxxxxxxNRHLRFRDLARDILGPKWARLTVAPIQFAVCLGT

Protein Length: 116

Fln nts: ATCGGGAGGATTCAGAAACCGAAGCACTGAT_-_ATGGGATCTAAGGATCATCTGGATGCAGGGGCTGTATTTGTCTTGGAATCCAAAGGGAATTGGTTTCATGCCGGTTACCATTTGACTACATCCATAGCAGCACCGGCCCTGCTGAGTCTGCCATTTGCATTTGCAGCATTGGGATGGTTTGCGGGGATTTTGTGTCTCATTGTTGGAGCCGCCGTCACATTTTAxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxGAATCGCCACCTCCGTTTCAGAGACCTGGCCAGAGACATTCTAGGACCCAAATGGGCTCGTTTGACTGTGGCACCGATCCAATTCGCAGTTTGTTTGGGTACTGT

Fln Alignment:

HA8LWWM01AWMXE___GGFRNRSTDMGSKDHLDAGAVFVLESKGNWFHAGYHXXXXXXXXXXXXXXXXXXXXGWFAGILCLIVGAAVTFYxxxxxxxxxxxxxxxxNRHLRFRDLARDILGPKWARLTVAPIQFAVCLG
F4HW02________________GEERSGDGEKRGEEVVDAGSLFVLKSKGTWWHCGFHLTTSIVAPALLSLPYAFKFLGWAAGISCLVGGAAVTFYxxxxxxxxxxxxxxxxNRYLRFRDMAHHILSPKWGRYYVGPIQMAVCYG

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain