SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene162207

Length: 327 nt

UniGene Fasta

>sp_v3.0_unigene162207
ATGCAAAGTCTGATAGGGTTTTTAGGGTCATGGACAATGTAAATGTGGTGGGCAAAGCGGACGCTGTTACTTTCATGGGTTCCACTGCAATTGCATCTACGCTTCATGCAGCCGCCATTTTGCTTAGGATCAGTACGGATTGGGACTGGTTCATCACCCTCAGCGCCATGGATTACCCATTAATTACCCAAGATGATTTGCTTTATGTATTATCATATTTGCCACGGGATCTCAACTTTATTGAGCATACAAGTGACCTTGGATGGAAAGAGTATCAAAGGGCAAAGCCTATCATTATTGATCCTGGGCTTTATCTGTCTAGGAAAA

Ace file of the UniGene sp_v3.0_unigene162207

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana] dbj\|BAB10223.1\| glycosylation enzyme-like protein [Arabidopsis thaliana] gb\|AAP21301.1\| At5g39990 [Arabidopsis thaliana] dbj\|BAE99445.1\| hypothetical protein	-	-	3.0e-36	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Sma3	Acetylglucosaminyltransferase, putative	-	-	1.26e-27	-

Source	ECs	Term	Type	e value	Identity
Sma3	Protein xylosyltransferase.	EC:2.4.2.26	-	7.64e-30	-

Source	KEGGs	Term	e value	Identity
Sma3	Glycosaminoglycan biosynthesis - chondroitin sulfate	00532	7.64e-30	%
Sma3	Glycosaminoglycan biosynthesis - heparan sulfate	00534	7.64e-30	%
Sma3	Metabolic pathways	01100	7.64e-30	%

Source	Gene names
Sma3	109N23.3; AT4g03340; AT4g27480; At1g03520; At1g53100; At1g71070; At2g37580; At2g37585; At3g03690; At3g15350; At3g24040; At4g03340; At5g15050; At5g39990; B1015E06.23; BGGP; F23N20.6; F27G19.80; F2G14_170; F4C21.27; F8L10.4; GSVIVT00003832001; GSVIVT0001688

Source	GOs	Term	Type	e value	Identity
Sma3	membrane	GO:0016020	Cellular Component	0.0	-
Sma3	acetylglucosaminyltransferase activity	GO:0008375	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Inositol monophosphatase	IPR000760	-	-
Sma3	Glycosyl transferase, family 14	IPR003406	-	-
Sma3	Protein of unknown function DUF674	IPR007750	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G39990.1	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein chr5:16004494-16006428 FORWARD LENGTH=447	5.60519e-45	64%
RefSeq	Arabidopsis thaliana	NP_198815.1	Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein [Arabidopsis thaliana]	7.00649e-45	64%
RefSeq	Populus trichocarpa	XP_002305329.1	predicted protein [Populus trichocarpa]	0.0	68%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: B8LL34

Fln msg: Distance to subject end: 193 aas, your sequence is shorter than subject: 108 - 423

Fln protein: AKSDRVFRVMDNVNVVGKADAVTFMGSTAIASTLHAAAILLRISTDWDWFITLSAMDYPLITQDDLLYVLSYLPRDLNFIEHTSDLGWKEYQRAKPIIIDPGLYLSRK

Protein Length: 109

Fln nts: ATGCAAAGTCTGATAGGGTTTTTAGGGTCATGGACAATGTAAATGTGGTGGGCAAAGCGGACGCTGTTACTTTCATGGGTTCCACTGCAATTGCATCTACGCTTCATGCAGCCGCCATTTTGCTTAGGATCAGTACGGATTGGGACTGGTTCATCACCCTCAGCGCCATGGATTACCCATTAATTACCCAAGATGATTTGCTTTATGTATTATCATATTTGCCACGGGATCTCAACTTTATTGAGCATACAAGTGACCTTGGATGGAAAGAGTATCAAAGGGCAAAGCCTATCATTATTGATCCTGGGCTTTATCTGTCTAGGAAAA

Fln Alignment:

HA8LWWM01A3MPO___AKSDRVFRVMDNVNVVGKADAVTFMGSTAIASTLHAAAILLRISTDWDWFITLSAMDYPLITQDDLLYVLSYLPRDLNFIEHTSDLGWKEYQRAKPIIIDPGLYLSRK
B8LL34________________AKSDRVFRVMDNVNVMGKADAVTYMGSTAIASTLHAAAILLRVSTNWDWLITLSALDYPLITQDDLLHVLSYLPRDFNFIDHTSDLGWKEYQRAKPIIIDPGLYLSTK

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain