SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene162114

Length: 338 nt

UniGene Fasta

>sp_v3.0_unigene162114
ATCAAACCCACTAACATTCTGTTGGATGACGAAATGAATGCGTGTCTAGCCGATTTTGGTCTGGCGAGGATCGTGATTAAAGAAGGGGAATCCCATTTCACAACTAATGTTGCAGGAACGATCGGCTACATGGCCCCAGAATATGCTCTCTACGGCCACTTGACGGACAAATGCGATGTGTATAGTTTTGGGGTTTTGCTGTTAGAGATCGTGAGTGGCAGAAAGGCTTTGGACACCTCCGCTGACTCAGCCTCCGAATACTCCATCGCGGATTGGGCATGGGCAAAGCTGAAGAAAGGCGATATCAGTGAAATAGTAGACGACAGAATCCGTCAGTG

Ace file of the UniGene sp_v3.0_unigene162114

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ser/Thr protein kinase isolog [Arabidopsis thaliana]	-	-	3.0e-28	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	74%
Sma3	Chromosome chr10 scaffold_81, whole genome shotgun sequence	-	-	3.0e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	2-alkenal reductase.	EC:1.3.1.74	-	3.604e-08	-
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	9.513e-09	-
Sma3		EC:2.7.11.3-	-	2.262e-07	-

Source	Gene names
Sma3	170F8.8; AT1G07650; AT1G29720; AT1G51820; AT1G53420; AT1G53430; AT1G53440; AT3G02130; AT3G14840; At1g11050; At1g29720; At1g29730; At1g70450; At1g70460; At1g74490; At2g42960; At2g48010; At3g02130/F14P3_22; At3g59110; B1065E10.29; F14P3.22; F17J16_160; F17O

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	metal ion transmembrane transporter activity	GO:0046873	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	lignin metabolic process	GO:0009808	Biological Process	-
Sma3	pollen maturation	GO:0010152	Biological Process	-
Sma3	metal ion transport	GO:0030001	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Beta-lactamase, class-A/D	IPR000871	-	-
Sma3	Blue (type 1) copper domain	IPR000923	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Transcription factor, MADS-box	IPR002100	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB	IPR002523	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Leucine-rich repeat-containing N-terminal, type 2	IPR013210	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Beta-ketoacyl synthase, active site	IPR018201	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G11050.1	Protein kinase superfamily protein chr1:3681892-3683769 FORWARD LENGTH=625	7.0e-35	59%
RefSeq	Arabidopsis thaliana	NP_172572.1	putative receptor-like protein kinase [Arabidopsis thaliana]	9.0e-35	59%
RefSeq	Populus trichocarpa	XP_002306651.1	predicted protein [Populus trichocarpa]	9.0e-37	61%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ACH5

Fln msg: Distance to subject end: 82 aas, your sequence is shorter than subject: 112 - 246

Fln protein: IKPTNILLDDEMNACLADFGLARIVIKEGESHFTTNVAGTIGYMAPEYALYGHLTDKCDVYSFGVLLLEIVSGRKALDTSADSASEYSIADWAWAKLKKGDISEIVDDRIRQ

Protein Length: 113

Fln nts: ATCAAACCCACTAACATTCTGTTGGATGACGAAATGAATGCGTGTCTAGCCGATTTTGGTCTGGCGAGGATCGTGATTAAAGAAGGGGAATCCCATTTCACAACTAATGTTGCAGGAACGATCGGCTACATGGCCCCAGAATATGCTCTCTACGGCCACTTGACGGACAAATGCGATGTGTATAGTTTTGGGGTTTTGCTGTTAGAGATCGTGAGTGGCAGAAAGGCTTTGGACACCTCCGCTGACTCAGCCTCCGAATACTCCATCGCGGATTGGGCATGGGCAAAGCTGAAGAAAGGCGATATCAGTGAAATAGTAGACGACAGAATCCGTCAGTG

Fln Alignment:

HA8LWWM01C0YVS___IKPTNILLDDEMNACLADFGLARIVIKEGESHFTTNVAGTIGYMAPEYALYGHLTDKCDVYSFGVLLLEIVSGRKALDTSADSASEYSIADWAWAKLKKGDISEIVDDRIRQ
D5ACH5________________IKPTNILLDDEMNAFVADFGLARMMTKGGESHITTKVAGTHGYLAPEYALYGQLTDKSDVYSFGVLLLEIMSGRKALDTSGKSVPHYLITDWAWSLVKIGRTSEIIEERIRQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain