SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene162106

Length: 311 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene162106
CCACCTTTAATCTGTTGTTTTGGGGCAGCACATAATAAGTTTTTTCCCATTTCTGCAAGACATAAGGCTCCAGAGTTGTATATGACATCTGAGGGGCTTCACTGGAATCCTGCAGAATTTGTTAGGGCACGAGGAGGGACCCCATCTAGTGTGGCTATTGCACTTGGTCAGTTAGGTGGCAGAGTCGCATTTATGGGCAAAGTTGGTAATGATGCATTTGGTCGTCAAATGGTTATCACCTTGAACATGAACAATGTTCAAACTCGTGGTATTCGAATTGATTCCTCTTCATCCACATCGGTTTCTTATAT

Ace file of the UniGene sp_v3.0_unigene162106 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00294, PfkB, pfkB family carbohydrate kinase	-	-	6.0e-11	37%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	54%

Source	Gene names
Sma3	GSVIVT00021445001; GSVIVT00030019001; Os01g0851000; OsI_04455; OsJ_04093; P0529H11.26; PHYPADRAFT_141786; POPTRDRAFT_872310;

Source	GOs	Term	Type	e value	Identity
Sma3	kinase activity	GO:0016301	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	0.0	-
Sma3	Carbohydrate/purine kinase	IPR011611	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G54090.1	FLN1 fructokinase-like 1 chr3:20028145-20029835 FORWARD LENGTH=471	2.0e-26	49%
RefSeq	Arabidopsis thaliana	NP_190977.1	fructokinase-like 1 [Arabidopsis thaliana]	2.0e-26	49%
RefSeq	Populus trichocarpa	XP_002312288.1	predicted protein, partial [Populus trichocarpa]	9.0e-26	49%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRB5

Fln msg: Distance to subject end: 228 aas, atg_distance in limit (1-15): atg_distance = 16, No stop codon before M and M found is too far from subject M, your sequence is shorter than subject: 76 - 347

Fln protein: MTSEGLHWNPAEFVRARGGTPSSVAIALGQLGGRVAFMGKVGNDAFGRQMVITLNMNNVQTRGIRIDSSSSTSVSY

Protein Length: 77

Fln nts: CCACCTTTAATCTGTTGTTTTGGGGCAGCACATAATAAGTTTTTTCCCATTTCTGCAAGACATAAGGCTCCAGAGTTGTATATGACATCTGAGGGGCTTCACTGGAATCCTGCAGAATTTGTTAGGGCACGAGGAGGGACCCCATCTAGTGTGGCTATTGCACTTGGTCAGTTAGGTGGCAGAGTCGCATTTATGGGCAAAGTTGGTAATGATGCATTTGGTCGTCAAATGGTTATCACCTTGAACATGAACAATGTTCAAACTCGTGGTATTCGAATTGATTCCTCTTCATCCACATCGGTTTCTTATAT

Fln Alignment:

HA8LWWM01C3XPV___FVRARGGTPSSVAIALGQLGGRVAFMGKVGNDAFGRQMVITLNMNNVQTRGIRID
C0PRB5________________FQKAAGGAPANVAVGISRLGGRSAFVGKVGDDEFGRMLADILRENNVMDRGIRFD

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain