SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene162066

Length: 228 nt

UniGene Fasta

>sp_v3.0_unigene162066
CGACTGTGATCTTCTACGACAACCAGAGTGGGATTCATTTATCAGAGAATCCCATGTTCCACGACCACTCCAAGCACATTGATTTCAGGTACCACTTTATCCGGGATATGGTACAACGGGGAGTAGTTAGGCTCCAACACATCAGGATAGATGAGCAGGTTGCAGACTTTCTCACGAAGCCTCTTGGGAAGGTCAAATTCTTAACCTCCCGAGAGGGACTTAGATTGT

Ace file of the UniGene sp_v3.0_unigene162066

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative gag-pol polyprotein (Fragment) n=1 Tax=Picea abies RepID=B2KZG9_PICAB	-	-	2.0e-17	61%
FL-Next	sp=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Nicotiana tabacum (Common tobacco).	-	-	0.0	44%
Sma3	Tpv2-1c protein	-	-	9.26e-06	-

Source	Gene names
Sma3	B1110B01.4; CCHC; LOC_Os11g06960; Tpv2-1c;

Source	GOs	Term	Type	Identity
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: sp_plants

Fln subject: P10978

Fln msg: STOP codon was not found. Distance to subject end: 3 aas, your sequence is shorter than subject: 75 - 1328

Fln protein: TVIFYDNQSGIHLSENPMFHDHSKHIDFRYHFIRDMVQRGVVRLQHIRIDEQVADFLTKPLGKVKFLTSREGLRL

Protein Length: 76

Fln nts: CGACTGTGATCTTCTACGACAACCAGAGTGGGATTCATTTATCAGAGAATCCCATGTTCCACGACCACTCCAAGCACATTGATTTCAGGTACCACTTTATCCGGGATATGGTACAACGGGGAGTAGTTAGGCTCCAACACATCAGGATAGATGAGCAGGTTGCAGACTTTCTCACGAAGCCTCTTGGGAAGGTCAAATTCTTAACCTCCCGAGAGGGACTTAGATTGT

Fln Alignment:

HA8LWWM01CB8CB___VIFYDNQSGIHLSENPMFHDHSKHIDFRYHFIRDMVQRGVVRLQHIRIDEQVADFLTKPLGKVKFLTSRE
P10978________________VVYCDSQSAIDLSKNSMYHARTKHIDVRYHWIREMVDDESLKVLKISTNENPADMLTKVVPRNKFELCKE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain