SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene162053

Length: 358 nt

UniGene Fasta

>sp_v3.0_unigene162053
TGGTTAATCCCATTGTTGCCTTTAAACTAGAGTGCCTAGTGAGGCTTTACACTAGGGTGCTAGATTTTGTGGTAACAATGCCATCGTGTCAGATTGATGCCTCTTGCCTTCAAGGAACCATGTTTTTGAAATCAGTTGATGCATCTAAGAAGGTGAAAGATGCCAACCTATTATTTGAGCTTTTGGATGAGATAATTAGGATTGTGGCGAAGTGAAATGTTGTCCAAGTCATCACAACTAATGCCTCAAACTATGTTCTTGTTGGTGAAATCCTAGAGTCCAAATATAGGACCATCTTTTGGACCCCATGCGTTGCACATTGCATAGACCTCATGCTTGAGGACATAGGCAAAGTGGG

Ace file of the UniGene sp_v3.0_unigene162053

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DUF659 domain containing protein	-	-	2.0e-34	65%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	52%

Source	Gene names
Sma3	GSVIVT00002235001; GSVIVT00003156001; GSVIVT00006112001; GSVIVT00010563001; GSVIVT00012114001; GSVIVT00012683001; GSVIVT00014176001; GSVIVT00029960001; GSVIVT00032847001; GSVIVT00035696001; GSVIVT00037342001; GSVIVT00037638001; GSVIVT00038726001; POPTRDRA

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	photosystem I	GO:0009522	Cellular Component	-
Sma3	thylakoid	GO:0009579	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	photosynthesis	GO:0015979	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Neuraxin/MAP1B repeat	IPR000102	-	-
Sma3	Photosystem I PsaA/PsaB	IPR001280	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Zinc finger, BED-type predicted	IPR003656	-	-
Sma3	Domain of unknown function DUF250	IPR004853	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3		IPR011523	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-
Sma3	ABC transporter, integral membrane type 1	IPR017940	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT4G15020.1	hAT transposon superfamily chr4:8575806-8578372 FORWARD LENGTH=768	3.0e-19	50%
RefSeq	Arabidopsis thaliana	NP_001154234.1	hAT and BED zinc finger domain-containing protein [Arabidopsis thaliana]	4.0e-19	50%
RefSeq	Populus trichocarpa	XP_002329897.1	predicted protein, partial [Populus trichocarpa]	6.0e-25	55%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5B5G2

Fln msg: Distance to subject end: 405 aas, your sequence is shorter than subject: 118 - 650

Fln protein: VNPIVAFKLECLVRLYTRVLDFVVTMPSCQIDASCLQGTMFLKSVDASKKVKDANLLFELLDEIIRIVAK*NVVQVITTNASNYVLVGEILESKYRTIFWTPCVAHCIDLMLEDIGKV

Protein Length: 119

Fln nts: TGGTTAATCCCATTGTTGCCTTTAAACTAGAGTGCCTAGTGAGGCTTTACACTAGGGTGCTAGATTTTGTGGTAACAATGCCATCGTGTCAGATTGATGCCTCTTGCCTTCAAGGAACCATGTTTTTGAAATCAGTTGATGCATCTAAGAAGGTGAAAGATGCCAACCTATTATTTGAGCTTTTGGATGAGATAATTAGGATTGTGGCGAAGTGAAATGTTGTCCAAGTCATCACAACTAATGCCTCAAACTATGTTCTTGTTGGTGAAATCCTAGAGTCCAAATATAGGACCATCTTTTGGACCCCATGCGTTGCACATTGCATAGACCTCATGCTTGAGGACATAGGCAAAGTGGG

Fln Alignment:

HA8LWWM01DPAIC___VLDFVVTMPSCQIDASCLQGTMFLKSVDASKKVKDANLLFELLDEIIRIVAK*NVVQVITTNASNYVLVGEILESKYRTIFWTPCVAHCIDLMLEDIGKV
A5B5G2________________LINFLVNSPA---------GTWFMKSIDASDTIKNGELMFKYLDEVVEEIGEENVVQVITDNASNYVNAGMRLMEKRRKLWWTPCVAHCIDLMLEDIGKL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain