UniGene Name: sp_v3.0_unigene162051
Length: 179 nt
UniGene Fasta |
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>sp_v3.0_unigene162051
C |
Ace file of the UniGene sp_v3.0_unigene162051 |
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Annotations |
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Source | Descriptions | Term | Type | e value | Identity |
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AutoFact | Vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine n=2 Tax=Populus trichocarpa RepID=B9I615_POPTR | - | - | 4.0e-23 | 84% |
FL-Next | tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis). | - | - | 0.0 | 86% |
Sma3 | Methionine synthase | - | - | 9.214e-22 | - |
Source | ECs | Term | Type | e value | Identity |
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Sma3 | 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase. | EC:2.1.1.14 | - | 1.95e-35 | - |
Source | KEGGs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | Cysteine and methionine metabolism | 00270 | 1.95e-35 | % | |
Sma3 | Selenocompound metabolism | 00450 | 1.95e-35 | % | |
Sma3 | Biosynthesis of plant hormones | 01070 | 1.95e-35 | % | |
Sma3 | Metabolic pathways | 01100 | 1.95e-35 | % | |
Sma3 | Biosynthesis of secondary metabolites | 01110 | 1.95e-35 | % |
Source | Gene names |
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Sma3 | At3g03780; At5g17920; At5g20980; BvMS1; CIMS; GSVIVT00003836001; GSVIVT00017439001; HvMS; LOC_Os12g42884; MET; METE; MPI7.9; MS1; MS2; MS3; MS4; Os12g0623900; Os12g0624000; OsI_39179; OsI_39180; OsJ_36927; PHYPADRAFT_205352; PHYPADRAFT_206341; PHYPADRAFT_ |
Source | GOs | Term | Type | e value | Identity |
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Sma3 | cytoplasm | GO:0005737 | Cellular Component | 0.0 | - |
Sma3 | peroxisome | GO:0005777 | Cellular Component | 0.0 | - |
Sma3 | cytosol | GO:0005829 | Cellular Component | 0.0 | - |
Sma3 | plasma membrane | GO:0005886 | Cellular Component | 0.0 | - |
Sma3 | chloroplast | GO:0009507 | Cellular Component | 0.0 | - |
Sma3 | chloroplast stroma | GO:0009570 | Cellular Component | 0.0 | - |
Sma3 | chloroplast envelope | GO:0009941 | Cellular Component | 0.0 | - |
Sma3 | apoplast | GO:0048046 | Cellular Component | 0.0 | - |
Sma3 | 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity | GO:0003871 | Molecular Function | 0.0 | - |
Sma3 | copper ion binding | GO:0005507 | Molecular Function | 0.0 | - |
Sma3 | zinc ion binding | GO:0008270 | Molecular Function | 0.0 | - |
Sma3 | methionine synthase activity | GO:0008705 | Molecular Function | 0.0 | - |
Sma3 | methionine biosynthetic process | GO:0009086 | Biological Process | 0.0 | - |
Sma3 | response to salt stress | GO:0009651 | Biological Process | 0.0 | - |
Sma3 | response to cadmium ion | GO:0046686 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
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Sma3 | Methionine synthase, vitamin-B12 independent | IPR002629 | - | 0.0 | - |
Sma3 | Cobalamin-independent methionine synthase | IPR006276 | - | 0.0 | - |
Sma3 | Cobalamin (vitamin B12)-independent methionine synthase MetE, N-terminal | IPR013215 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
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ATG | Arabidoptis thaliana | AT3G03780.1 | ATMS2, MS2 methionine synthase 2 chr3:957602-960740 FORWARD LENGTH=765 | 7.0e-27 | 77% |
RefSeq | Arabidopsis thaliana | NP_187028.1 | methionine synthase 2 [Arabidopsis thaliana] | 1.0e-26 | 77% |
RefSeq | Populus trichocarpa | XP_002319710.1 | vitamin-b12 independent methionine synthase, 5-methyltetrahydropteroyltriglutamate-homocysteine [Populus trichocarpa] | 2.0e-29 | 84% |
Full-Lengther Next Prediction |
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Fln status: Putative N-terminus
Fln database: coniferopsida.fasta
Fln subject: D5A7T4
Fln msg: Distance to subject end: 705 aas, atg_distance in limit (1-15): atg_distance = 3, W2: There is no M at the beginning, your sequence is shorter than subject: 59 - 766
Fln protein:
S
Protein Length:
60
Fln nts:
C
Fln Alignment:
HA8LWWM01CAV30___SHVVGYPRIGPKRELKFALESFWDGKSSAEDLERVAKDLRVSIWKQMVDAGLKHIPSNT
D5A7T4________________SHVVGYPRMGPKRELKFALESFWDGKSSAADLEAVAKGLRASIWKQMVAAGVKLIPSNT
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain