SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene162018

Length: 455 nt

UniGene Fasta

>sp_v3.0_unigene162018
TTCCATTTATGCCGTTGGGCCGCTCATATCTTCGTCTCTGTCGGAACATCACGATAACTATGAGAAGGAGGGCTGCCTCAAATGGCTAGACCGCCAGCCCGCCTCGTCCGTTCTGTTCGTTGCTTTCGGGAGCCGCGGCACGCTGTCGGAAAATCAGATTAGGGAACTTGCTTTGGGGCTAGAAGCAAGCGGGCAGCGCTTCCTTTGGGTGTTGCGTAGGGGAATGGAAATGAAGAAGAGAATGGCAGAATTGACGGAAAAGGCCCGGTTTGCAATGGCGGAGGGAGGGAGTTCATACAACGCGCTGGCCAACGTGGCTTCTGTCTGGAAGGAAATGCATGCCACTAAAACNCCACCTGCTACTTCCGAGATTTCACTCTCTCAGGAGTGACAGTTTCTTAGCTGCATCGCTATGAGAGGAAAGCTTTCATAGACTGATGATGCGATATTATATC

Ace file of the UniGene sp_v3.0_unigene162018

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	pfam00201, UDPGT, UDP-glucoronosyl and UDP-glucosyl transferase	-	-	7.0e-06	21%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	70%
Sma3	Hydroquinone glucosyltransferase	-	-	2.036e-15	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydroquinone glucosyltransferase.	EC:2.4.1.218	-	1.008e-10	-

Source	Gene names
Sma3	AS; A_IG002N01.15; At1g01420; At4g01070; B1040D09.41; F2N1.15; F6F3.22; GSVIVT00002450001; GSVIVT00019132001; GSVIVT00026996001; GSVIVT00026997001; OJ1116_H09.18; OSJNBa0038E17.19; OSJNBa0082C09.34; Os01g0620300; Os01g0697100; Os02g0242100; Os02g0242900;

Source	GOs	Term	Type	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	methyltransferase activity	GO:0008168	Molecular Function	-
Sma3	transferase activity, transferring hexosyl groups	GO:0016758	Molecular Function	-
Sma3	hydroquinone glucosyltransferase activity	GO:0050505	Molecular Function	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	response to toxin	GO:0009636	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	methylation	GO:0032259	Biological Process	-
Sma3	xenobiotic catabolic process	GO:0042178	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	DNA methylase, N-6 adenine-specific, conserved site	IPR002052	-	0.0	-
Sma3	UDP-glucuronosyl/UDP-glucosyltransferase	IPR002213	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G16520.3	-	1.0e-19	47%
RefSeq	Arabidopsis thaliana	NP_850597.1	UDP-glucosyl transferase 88A1 [Arabidopsis thaliana]	1.0e-19	47%
RefSeq	Populus trichocarpa	XP_002320190.1	predicted protein [Populus trichocarpa]	8.0e-19	60%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: A9NXT2

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 77 aas, your sequence is shorter than subject: 130 - 464

Fln protein: SIYAVGPLISSSLSEHHDNYEKEGCLKWLDRQPASSVLFVAFGSRGTLSENQIRELALGLEASGQRFLWVLRRGMEMKKRMAELTEKARFAMAEGGSSYNALANVASVWKEMHATKTPPATSEISLSQE*

Protein Length: 131

Fln nts: TTCCATTTATGCCGTTGGGCCGCTCATATCTTCGTCTCTGTCGGAACATCACGATAACTATGAGAAGGAGGGCTGCCTCAAATGGCTAGACCGCCAGCCCGCCTCGTCCGTTCTGTTCGTTGCTTTCGGGAGCCGCGGCACGCTGTCGGAAAATCAGATTAGGGAACTTGCTTTGGGGCTAGAAGCAAGCGGGCAGCGCTTCCTTTGGGTGTTGCGTAGGGGAATGGAAATGAAGAAGAGAATGGCAGAATTGACGGAAAAGGCCCGGTTTGCAATGGCGGAGGGAGGGAGTTCATACAACGCGCTGGCCAACGTGGCTTCTGTCTGGAAGGAAATGCATGCCACTAAAACaCCACCTGCTACTTCCGAGATTTCACTCTCTCAGGAGTGACAGTTTCTTAGCTGCATCGCTATGAGAGGAAAGCTTTCATAGACTGATGATGCGATATTATATC

Fln Alignment:

HA8LWWM01CCMCB___SIYAVGPLISSSLSEHHDNYEKEGCLKWLDRQPASSVLFVAFGSRGTLSENQIRELALGLEASGQRFLWVL
A9NXT2________________SIYPVGPLISSPESDHHDG---SGSLQWLDKQPAASVLFVSFGSVNFLSADQIAELALGLEGSGQRFLWVL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain