SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene161996

Length: 237 nt

UniGene Fasta

>sp_v3.0_unigene161996
TGTCCTGAATTGTGGAATTTTAGCACTTGATGAGCCAACTACAAACCTAGATGCACCTAATGCAGAAAGCCTTGCTGCTGCTCTCCTGAGGATAATGGAGGATAGAAAGGCCCAAGAAAATTTTCAACTGTTAGTAATCACCCACGATGAAAGATTTGCCCAGCTAATTGGTCAACGTCAACATGCTGAGAGATACTACCGCATCTCAAAGATGAGCATCAGCACAGCATAATTGAG

Ace file of the UniGene sp_v3.0_unigene161996

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA repair protein RAD50 [Arabidopsis thaliana] sp\|Q9SL02.2\|RAD50_ARATH RecName: Full=DNA repair protein RAD50; Short=AtRAD50 gb\|AAF36810.1\|AF168748_1 DNA repair-recombination protein [Arabidopsis thaliana] gb\|AAD15407.2\| putative RAD50 DNA repair protein	-	-	9.0e-29	86%
FL-Next	sp=DNA repair protein RAD50; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	86%
Sma3	Rad50 DNA repair/recombination protein	-	-	9.837e-09	-

Source	Gene names
Sma3	At2g31970; CHLREDRAFT_13480; F22D22.28; GSVIVT00031663001; MICPUCDRAFT_46506; MICPUN_106725; OSTLU_28736; Os02g0497500; OsI_07303; OsJ_06817; Ot01g01290; POPTRDRAFT_829809; RAD50; RCOM_0523620; Rad50; VITISV_022226; rad50;

Source	GOs	Term	Type	Identity
Sma3	chromosome, telomeric region	GO:0000781	Cellular Component	-
Sma3	chromosome	GO:0005694	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	Mre11 complex	GO:0030870	Cellular Component	-
Sma3	nuclease activity	GO:0004518	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	DNA repair	GO:0006281	Biological Process	-
Sma3	meiosis	GO:0007126	Biological Process	-
Sma3	vesicle-mediated transport	GO:0016192	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RecF/RecN/SMC	IPR003395	-	-
Sma3	Recombination/repair protein Rad50	IPR004584	-	-
Sma3	Rad50 zinc hook	IPR007517	-	-
Sma3	Zinc hook, Rad50	IPR013134	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT2G31970.1	RAD50, ATRAD50 DNA repair-recombination protein (RAD50) chr2:13600657-13608815 FORWARD LENGTH=1316	3.0e-35	86%
RefSeq	Arabidopsis thaliana	NP_565733.1	DNA repair protein RAD50 [Arabidopsis thaliana]	3.0e-35	86%
RefSeq	Populus trichocarpa	XP_002300148.1	predicted protein [Populus trichocarpa]	4.0e-36	91%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9SL02

Fln msg: your sequence is shorter than subject: 77 - 1316

Fln protein: VLNCGILALDEPTTNLDAPNAESLAAALLRIMEDRKAQENFQLLVITHDERFAQLIGQRQHAERYYRISKMSISTA*

Protein Length: 78

Fln nts: TGTCCTGAATTGTGGAATTTTAGCACTTGATGAGCCAACTACAAACCTAGATGCACCTAATGCAGAAAGCCTTGCTGCTGCTCTCCTGAGGATAATGGAGGATAGAAAGGCCCAAGAAAATTTTCAACTGTTAGTAATCACCCACGATGAAAGATTTGCCCAGCTAATTGGTCAACGTCAACATGCTGAGAGATACTACCGCATCTCAAAGATGAGCATCAGCACAGCATAA___TTGAG

Fln Alignment:

HA8LWWM01CFC2K___LNCGILALDEPTTNLDAPNAESLAAALLRIMEDRKAQENFQLLVITHDERFAQLIGQRQHAERYYRISK
Q9SL02________________LNCGILALDEPTTNLDGPNSESLAGALLRIMEDRKGQENFQLIVITHDERFAQMIGQRQHAEKYYRVAK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain