SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene161961

Length: 275 nt

UniGene Fasta

>sp_v3.0_unigene161961
AGGATGAGCTGCAACGGTTGTCGAGTTCTGCGTAAAGGTTGCAGTGATACCTGCATTCTTCGGCCTTGTCTGCAATGGATCGAATCACCTGAAGCCCAGGGACACGCCACTGTATTTGTTGCGAAGTTCTTTGGCCGTGCGGGCCTGATGTCGTTCATTAGCGCTGTGCCGGATCATCAGAGGCCCGGTACGTTCGAATTCATAAGTGATCAATTTCTCAAATGGACTTCATAAGCTCGATAAATTCCTTATATAGATGTCTACTCCGATTTAAA

Ace file of the UniGene sp_v3.0_unigene161961

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	LOB domain-containing protein, putative n=1 Tax=Ricinus communis RepID=B9SGY6_RICCO	-	-	7.0e-29	90%
FL-Next	sp=LOB domain-containing protein 38; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	86%
Sma3	Seed specific protein Bn15D17A	-	-	5.128e-16	-

Source	Gene names
Sma3	ASL36; ASL37; ASL38; ASL39; ASL40; ASL41; GSVIVT00001451001; GSVIVT00014946001; GSVIVT00017674001; GSVIVT00019643001; GSVIVT00030342001; GSVIVT00038218001; LBD37; LBD38; LBD39; LBD40; LBD41; LBD42; LOC_Os03g33090; LOC_Os03g41330; OSJNBa0035N15.7; OSJNBb00

Source	GOs	Term	Type	e value	Identity
Sma3	response to gibberellin stimulus	GO:0009739	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Lateral organ boundaries, LOB	IPR004883	-	0.0	-
Sma3	Asymmetric leaves, AS2/LOB	IPR017414	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G49940.1	LBD38 LOB domain-containing protein 38 chr3:18514465-18515302 FORWARD LENGTH=247	7.0e-36	86%
RefSeq	Arabidopsis thaliana	NP_190563.1	LOB domain-containing protein 38 [Arabidopsis thaliana]	9.0e-36	86%
RefSeq	Populus trichocarpa	XP_002304317.1	predicted protein [Populus trichocarpa]	1.0e-37	89%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: sp_plants

Fln subject: Q9SN23

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 156 aas, your sequence is shorter than subject: 77 - 247

Fln protein: MSCNGCRVLRKGCSDTCILRPCLQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPDHQRPGTFEFISDQFLKWTS*

Protein Length: 78

Fln nts: AGG_-_ATGAGCTGCAACGGTTGTCGAGTTCTGCGTAAAGGTTGCAGTGATACCTGCATTCTTCGGCCTTGTCTGCAATGGATCGAATCACCTGAAGCCCAGGGACACGCCACTGTATTTGTTGCGAAGTTCTTTGGCCGTGCGGGCCTGATGTCGTTCATTAGCGCTGTGCCGGATCATCAGAGGCCCGGTACGTTCGAATTCATAAGTGATCAATTTCTCAAATGGACTTCATAAGCTCGATAAATTCCTTATATAGATGTCTACTCCGATTTAAA

Fln Alignment:

HA8LWWM01A84HB___MSCNGCRVLRKGCSDTCILRPCLQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPDHQRPGTFE
Q9SN23________________MSCNGCRVLRKGCSENCILRPCIQWIESPEAQGHATVFVAKFFGRAGLMSFISAVPESQCPALFQ

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain