SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene161960

Length: 417 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene161960
TTGATGCCAAATTTGTTGTAGAAATTATAGAACCAATTTGAGATATGATCCGCCATGCAGACACAGATGGTCCATGTTTAGGTGAGATTTATGAGAACATGGACTCCATGTGTGAGAGGATCCAAACCGTCACAGATAGGAAGGATCCTACTTTATGGCCACAACTGAAAAAGTTTATACATGGGCGTTGGAATAAACTAAACACCCCTCTTCATATGGCATCTTATGTAGTTAATCCAAAATGGTATGATCCCACAACAAGAAGGAGGCCTCCATCCCAAGATAAAGAGGTGTTCAAAGGATTCTTGAACGTTGTCAAGAAAATTTATGGTAATACAGAAGAAGCCTCTGACATACGATCTCAGTTTGCCCAATTTTCACGTGGTCGAGTTGTCTTTGGTTCACATGCATCTTTAG

Ace file of the UniGene sp_v3.0_unigene161960 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os02g0513700 protein n=1 Tax=Oryza sativa Japonica Group RepID=Q0E0X9_ORYSJ	-	-	1.0e-12	31%
FL-Next	tr=Putative uncharacterized protein Sb02g011180; Sorghum bicolor (Sorghum) (Sorghum vulgare).	-	-	0.0	34%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: C5X5S6

Fln msg: Distance to subject end: 141 aas, your sequence is shorter than subject: 138 - 647

Fln protein: DAKFVVEIIEPI*DMIRHADTDGPCLGEIYENMDSMCERIQTVTDRKDPTLWPQLKKFIHGRWNKLNTPLHMASYVVNPKWYDPTTRRRPPSQDKEVFKGFLNVVKKIYGNTEEASDIRSQFAQFSRGRVVFGSHASL

Protein Length: 139

Fln nts: TTGATGCCAAATTTGTTGTAGAAATTATAGAACCAATTTGAGATATGATCCGCCATGCAGACACAGATGGTCCATGTTTAGGTGAGATTTATGAGAACATGGACTCCATGTGTGAGAGGATCCAAACCGTCACAGATAGGAAGGATCCTACTTTATGGCCACAACTGAAAAAGTTTATACATGGGCGTTGGAATAAACTAAACACCCCTCTTCATATGGCATCTTATGTAGTTAATCCAAAATGGTATGATCCCACAACAAGAAGGAGGCCTCCATCCCAAGATAAAGAGGTGTTCAAAGGATTCTTGAACGTTGTCAAGAAAATTTATGGTAATACAGAAGAAGCCTCTGACATACGATCTCAGTTTGCCCAATTTTCACGTGGTCGAGTTGTCTTTGGTTCACATGCATCTTTAG

Fln Alignment:

HA8LWWM01CAV95___FVVEIIEPI*DMIRHADTDGPCLGEIYENMDSMCERIQTVTDR-------KDPTLWPQLKKFIHGRWNKLNTPLHMASYVVNP-----KWYDPTTRRRPPSQDKEVFKGFLNVVKKIYGNTEEASDIRSQFAQFS
C5X5S6________________FILKITTPIYEMIRITDTDTPCLHLVYEMWDSMIENVKKAIYRYEGKQEDEHSDLYSVIYDILIARWTKGNNPLHCLAHSLNPRYYSQKWLEEGVGRVPPHKDKEVSKMRMTCFKRFFPNPEDLAKVKEEYARFS

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain