SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene161945

Length: 361 nt

UniGene Fasta

>sp_v3.0_unigene161945
GGTAGTAGAGAGTGCGGCTGGCTTGAATAGATTGGCATATTTCGTTGCAAAGGATTCTGTTGATCTCTTCAACATAGTGATTAAGCCGCTTGTTTACCTTTCAATGTTCTATTTTTTCAACAATCCACGATCAACCTTTGCAGAAAATTATATTGTGACACTTGCCCTCGTCTACTGTGTGGTGGGAATTGCATATATCTTTGCCATCGCTCTTGATCCAGGATCAGCTCAACTTTGTTCTGTACTTATTCCCGTTGTTTCAACACTGATAGCAACTCAACCAAATTCAAATGGTATTTTGAAGTTATCTTAACGACTCAACTTATGCAAGCTGGCTTCTCGAGGCATATGTGGTAGCGAA

Ace file of the UniGene sp_v3.0_unigene161945

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ATP-binding cassette transporter n=2 Tax=Selaginella moellendorffii RepID=D8RGY6_SELML	-	-	5.0e-35	66%
FL-Next	sp=ABC transporter G family member 28; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	67%
Sma3	White-brown-complex ABC transporter family	-	-	1.592e-10	-

Source	ECs	Term	Type	e value	Identity
Sma3	Xenobiotic-transporting ATPase.	EC:3.6.3.44	-	1.241e-07	-

Source	Gene names
Sma3	At1g53390; At2g37010; At5g60740; B1206D04.17; F12M16.28; GSVIVT00018161001; GSVIVT00023219001; GSVIVT00024579001; LOC_Os10g30610; LOC_Os11g22350; MUP24.16; NAP12; OSJNBa0040D17.13; Os04g0194500; Os06g0731200; Os10g0442900; Os11g0416900; OsI_14980; OsI_245

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Lipocalin	IPR002345	-	-
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Phosphopantetheine attachment site	IPR006162	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Glycoside hydrolase, family 5, conserved site	IPR018087	-	-
Sma3	Sodium:dicarboxylate symporter, conserved site	IPR018107	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G60740.1	ABC transporter family protein chr5:24425824-24430269 REVERSE LENGTH=1109	9.0e-38	67%
RefSeq	Arabidopsis thaliana	NP_200882.4	ABC transporter G family member 28 [Arabidopsis thaliana]	1.0e-37	67%
RefSeq	Populus trichocarpa	XP_002316381.1	white-brown-complex ABC transporter family, partial [Populus trichocarpa]	4.0e-39	67%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q9FF46

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 54 aas, your sequence is shorter than subject: 104 - 1109

Fln protein: VVESAAGLNRLAYFVAKDSVDLFNIVIKPLVYLSMFYFFNNPRSTFAENYIVTLALVYCVVGIAYIFAIALDPGSAQLCSVLIPVVSTLIATQPNSNGILKLS*

Protein Length: 105

Fln nts: GGTAGTAGAGAGTGCGGCTGGCTTGAATAGATTGGCATATTTCGTTGCAAAGGATTCTGTTGATCTCTTCAACATAGTGATTAAGCCGCTTGTTTACCTTTCAATGTTCTATTTTTTCAACAATCCACGATCAACCTTTGCAGAAAATTATATTGTGACACTTGCCCTCGTCTACTGTGTGGTGGGAATTGCATATATCTTTGCCATCGCTCTTGATCCAGGATCAGCTCAACTTTGTTCTGTACTTATTCCCGTTGTTTCAACACTGATAGCAACTCAACCAAATTCAAATGGTATTTTGAAGTTATCTTAACGACTCAACTTATGCAAGCTGGCTTCTCGAGGCATATGTGGTAGCGAA

Fln Alignment:

HA8LWWM01DR48E___ESAAGLNRLAYFVAKDSVDLFNIVIKPLVYLSMFYFFNNPRSTFAENYIVTLALVYCVVGIAYIFAIALDPGSAQLCSVLIPVVSTLIATQPNSNGIL
Q9FF46________________ESRAGMSSLAYFLAKDTVDHFNTIVKPLVYLSMFYFFNNPRSTVTDNYVVLICLVYCVTGIAYTLAILFEPGPAQLWSVLLPVVLTLIATSTNDNKIV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain