UniGene Name: sp_v3.0_unigene161878
Length: 219 nt
UniGene Fasta |
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>sp_v3.0_unigene161878
G |
Ace file of the UniGene sp_v3.0_unigene161878 |
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Annotations |
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Source | Descriptions | Term | Type | e value | Identity |
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AutoFact | Phospholipase D n=1 Tax=Solanum lycopersicum RepID=Q9AWB6_SOLLC | - | - | 6.0e-23 | 80% |
FL-Next | sp=Phospholipase D; Picea sitchensis (Sitka spruce) (Pinus sitchensis). | - | - | 0.0 | 76% |
Sma3 | Phospholipase d beta, putative | - | - | 3.786e-11 | - |
Source | ECs | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | Phospholipase D. | EC:3.1.4.4 | - | 0.0 | - |
Source | KEGGs | Term | Type | e value | Identity |
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Sma3 | Glycerophospholipid metabolism | 00564 | 0.0 | % | |
Sma3 | Ether lipid metabolism | 00565 | 0.0 | % | |
Sma3 | Metabolic pathways | 01100 | 0.0 | % |
Source | Gene names |
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Sma3 | A_IG005I10.13; At2g42010; At4g00240; At4g11830; At4g11840; At4g11850; At4g35790; F4B14.60; F5I10.13; GSVIVT00001073001; GSVIVT00007835001; GSVIVT00015517001; GSVIVT00026323001; GSVIVT00032653001; GSVIVT00034191001; GSVIVT00035483001; LOC_Os03g02740; LOC_O |
Source | GOs | Term | Type | e value | Identity |
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Sma3 | cytoplasm | GO:0005737 | Cellular Component | 0.0 | - |
Sma3 | vacuole | GO:0005773 | Cellular Component | 0.0 | - |
Sma3 | plasma membrane | GO:0005886 | Cellular Component | 0.0 | - |
Sma3 | chloroplast | GO:0009507 | Cellular Component | 0.0 | - |
Sma3 | membrane | GO:0016020 | Cellular Component | 0.0 | - |
Sma3 | cytosolic ribosome | GO:0022626 | Cellular Component | 0.0 | - |
Sma3 | catalytic activity | GO:0003824 | Molecular Function | 0.0 | - |
Sma3 | phospholipase D activity | GO:0004630 | Molecular Function | 0.0 | - |
Sma3 | calcium ion binding | GO:0005509 | Molecular Function | 0.0 | - |
Sma3 | NAPE-specific phospholipase D activity | GO:0070290 | Molecular Function | 0.0 | - |
Sma3 | metabolic process | GO:0008152 | Biological Process | 0.0 | - |
Sma3 | response to cold | GO:0009409 | Biological Process | 0.0 | - |
Sma3 | embryo development ending in seed dormancy | GO:0009793 | Biological Process | 0.0 | - |
Sma3 | defense response to bacterium, incompatible interaction | GO:0009816 | Biological Process | 0.0 | - |
Sma3 | programmed cell death | GO:0012501 | Biological Process | 0.0 | - |
Sma3 | lipid catabolic process | GO:0016042 | Biological Process | 0.0 | - |
Sma3 | phosphatidylcholine metabolic process | GO:0046470 | Biological Process | 0.0 | - |
Sma3 | phosphatidic acid metabolic process | GO:0046473 | Biological Process | 0.0 | - |
Sma3 | response to cadmium ion | GO:0046686 | Biological Process | 0.0 | - |
Source | InterPros | Term | Type | e value | Identity |
---|---|---|---|---|---|
Sma3 | C2 calcium-dependent membrane targeting | IPR000008 | - | 0.0 | - |
Sma3 | Phospholipase D/Transphosphatidylase | IPR001736 | - | 0.0 | - |
Sma3 | Adenosine/AMP deaminase active site | IPR006650 | - | 0.0 | - |
Sma3 | Phospholipase D, plant | IPR011402 | - | 0.0 | - |
Sma3 | Phospholipase D | IPR015679 | - | 0.0 | - |
Sma3 | C2 membrane targeting protein | IPR018029 | - | 0.0 | - |
Source | Species | ID | Description | e value | Identity |
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ATG | Arabidoptis thaliana | AT2G42010.1 | PLDBETA1, PLDBETA phospholipase D beta 1 chr2:17533018-17537990 REVERSE LENGTH=1083 | 1.0e-29 | 83% |
RefSeq | Arabidopsis thaliana | NP_565963.2 | phospholipase D [Arabidopsis thaliana] | 2.0e-29 | 83% |
RefSeq | Populus trichocarpa | XP_002299568.1 | predicted protein [Populus trichocarpa] | 4.0e-28 | 78% |
Full-Lengther Next Prediction |
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Fln status: Internal
Fln database: coniferopsida.fasta
Fln subject: B8LQ49
Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 238 aas, your sequence is shorter than subject: 62 - 861
Fln protein:
V
Protein Length:
63
Fln nts:
G
Fln Alignment:
HA8LWWM01ERQVS___VDMSIHTAYVEAIRSAQHFIYIENQYFIGSSYNWSAHKEIGANNMIPMELALKIAKKIQ
B8LQ49________________VDKSIHTAYVKAIRSAQHFIYIENQYFVGSSYNWPSYKNAGAHNLIPMEIALKVADKIR
Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain