SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene161857

Length: 155 nt

UniGene Fasta

>sp_v3.0_unigene161857
TCAGAAAAGCAAGCTCAGGCAATCTTGGATATCACTCTTCGAAGACTTACATTGTTTGAGAGAAGCAAGTTTGTTGAGGAGGACAGATCATTGACTGGACAAATTTCAAGTTTAAAGCAACTATTAGCTAAACAAGCAGGAAATTTTGCAGGTTA

Ace file of the UniGene sp_v3.0_unigene161857

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA gyrase subunit A, chloroplastic/mitochondrial n=1 Tax=Nicotiana benthamiana RepID=GYRA_NICBE	-	-	1.0e-07	66%
FL-Next	sp=DNA gyrase subunit A, chloroplastic/mitochondrial; Nicotiana benthamiana.	-	-	0.0	66%

Source	ECs	Term	Type	e value	Identity
Sma3	DNA topoisomerase (ATP-hydrolyzing).	EC:5.99.1.3	-	9.226e-07	-

Source	Gene names
Sma3	At3g10690; F13M14.2; GYRA; POPTRDRAFT_805680; T7M13.23;

Source	GOs	Term	Type	Identity
Sma3	chromosome	GO:0005694	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	nucleoid	GO:0009295	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	DNA topoisomerase (ATP-hydrolyzing) activity	GO:0003918	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	DNA topological change	GO:0006265	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	DNA topoisomerase, type IIA, subunit A/C-terminal	IPR002205	-	-
Sma3	DNA gyrase, subunit A	IPR005743	-	-
Sma3	DNA gyrase/topoisomerase IV, subunit A, C-terminal beta-pinwheel	IPR006691	-	-
Sma3	DNA topoisomerase, type IIA, subunit A, alpha-helical	IPR013757	-	-
Sma3	DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta	IPR013758	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G10690.1	GYRA DNA GYRASE A chr3:3339612-3346243 REVERSE LENGTH=950	5.0e-11	67%
RefSeq	Arabidopsis thaliana	NP_187680.2	DNA gyrase subunit A [Arabidopsis thaliana]	6.0e-11	67%
RefSeq	Populus trichocarpa	XP_002315402.1	predicted protein [Populus trichocarpa]	6.0e-11	64%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: sp_plants

Fln subject: Q5YLB5

Fln msg: Distance to subject end: 383 aas, your sequence is shorter than subject: 51 - 935

Fln protein: SEKQAQAILDITLRRLTLFERSKFVEEDRSLTGQISSLKQLLAKQAGNFAG

Protein Length: 52

Fln nts: TCAGAAAAGCAAGCTCAGGCAATCTTGGATATCACTCTTCGAAGACTTACATTGTTTGAGAGAAGCAAGTTTGTTGAGGAGGACAGATCATTGACTGGACAAATTTCAAGTTTAAAGCAACTATTAGCTAAACAAGCAGGAAATTTTGCAGGTTA

Fln Alignment:

HA8LWWM01AP99U___SEKQAQAILDITLRRLTLFERSKFVEEDRSLTGQISSLKQLLAKQ
Q5YLB5________________SEKQAEAILDISLRRLTALERNKFVEEGKSLRTQISKLEELLSSK

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain