SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene161816

Length: 269 nt

UniGene Fasta

>sp_v3.0_unigene161816
TGGTGGCTGTTTCCATCAAAGGTTCCAACACTGGTTGGGAAGCAATGTCCCGCAACTGGGGACAGAATTGGCAGAGCAACACCTATTTGTATGGGCAGAGTCTCTCCTTCCAGGTCACCACCAGCGATGGATCAACGACCACTTCCTATAACGTCACTGATGCAAATTGGCAATTCGGCCAGACCTTTGAAGGACTACAGGTATAAGTTATGTAAAGCAGAAGCGACGAAGCTGATGCTGTAGGAAAAATATGTAGTGGTTGCCACTCG

Ace file of the UniGene sp_v3.0_unigene161816

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	alpha-expansin 2 [Populus tremula x Populus tremuloides]	-	-	2.0e-25	83%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	84%
Sma3	Expansin	-	-	0.0	-

Source	Gene names
Sma3	AT1G69530; At1g26770; At1g69530; At2g40610; At5g02260; At5g05290; At5g56320; CDK3; CDK4; CDK5; CDK6; CDK7; Cs-EXPA1; EXP; EXP03; EXP1; EXP10; EXP13; EXP14; EXP18; EXP2; EXP3; EXP4; EXP7; EXP8; EXP9; EXPA1; EXPA10; EXPA14; EXPA15; EXPA2; EXPA3; EXPA4; EXPA

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	structural constituent of cell wall	GO:0005199	Molecular Function	-
Sma3	syncytium formation	GO:0006949	Biological Process	-
Sma3	plant-type cell wall organization	GO:0009664	Biological Process	-
Sma3	plant-type cell wall loosening	GO:0009828	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Regulator of chromosome condensation, RCC1	IPR000408	-	-
Sma3	Expansin	IPR002963	-	-
Sma3		IPR005132	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-
Sma3	Expansin/pollen allergen, DPBB domain	IPR007112	-	-
Sma3	Pollen allergen/expansin, C-terminal	IPR007117	-	-
Sma3	Expansin/Lol pI	IPR007118	-	-
Sma3		IPR014734	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G05290.1	ATEXPA2, EXP2, ATEXP2, ATHEXP ALPHA 1.12, EXPA2 expansin A2 chr5:1568752-1569712 FORWARD LENGTH=255	1.0e-27	74%
RefSeq	Arabidopsis thaliana	NP_177112.1	expansin A1 [Arabidopsis thaliana]	2.0e-28	73%
RefSeq	Populus trichocarpa	XP_002319409.1	hypothetical protein POPTRDRAFT_834669 [Populus trichocarpa]	2.0e-32	81%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LMF3

Fln msg: your sequence is shorter than subject: 68 - 250

Fln protein: VAVSIKGSNTGWEAMSRNWGQNWQSNTYLYGQSLSFQVTTSDGSTTTSYNVTDANWQFGQTFEGLQV*

Protein Length: 69

Fln nts: TGGTGGCTGTTTCCATCAAAGGTTCCAACACTGGTTGGGAAGCAATGTCCCGCAACTGGGGACAGAATTGGCAGAGCAACACCTATTTGTATGGGCAGAGTCTCTCCTTCCAGGTCACCACCAGCGATGGATCAACGACCACTTCCTATAACGTCACTGATGCAAATTGGCAATTCGGCCAGACCTTTGAAGGACTACAGGTATAA___GTTATGTAAAGCAGAAGCGACGAAGCTGATGCTGTAGGAAAAATATGTAGTGGTTGCCACTCG

Fln Alignment:

HA8LWWM01A2OGF___AVSIKGSNTGWEAMSRNWGQNWQSNTYLYGQSLSFQVTTSDGSTTTSYNVTDANWQFGQTFEGLQV
B8LMF3________________AVSIKGSNSGWQAMSRNWGQNWQSNSYLNGQTLSFQVTTSDGRTVTSYNVAPANWQFGQTFEGLQL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain