SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene161763

Length: 439 nt

UniGene Fasta

>sp_v3.0_unigene161763
ATGGAGTGAGATTGGCAAGTTATACTGATTTTGATTGGGCAATTTGTGCTTCTGATAGGAAGAGCACTTCAAGGTGCTATTTTGGGTTGGGTTCGGCAGTAGTGTCATGGTTCAGCCAGAAGCAGCAGTCAGTAGCATTGAGTTCAGCAAAAGCAGAGTATATGGCAGCCAGTCTAGCTAGTTGTGAGGCCATCTGGCTTCGCAAGATGTTGTTTGGCTTATTTGGTCAGCTGTTGAGACCTTCAGTGATTTACTGTGATAATCAGAGTTGCATTAAACTCACGGAGAATCCAGTATTTCATGACAGGTCAAAGCATATCAGGATCAAATATCATTTCATCAGAGACTGTGTTCAAAAGGGCGCTGTGAAGCTTGAGTATATTCCCACTGATGAGCAGGTTGCAGATATTCTTACCAAAGCCTTACCATGGGGCAAGAA

Ace file of the UniGene sp_v3.0_unigene161763

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative polyprotein n=1 Tax=Oryza sativa Japonica Group RepID=Q6I5H9_ORYSJ	-	-	5.0e-37	55%
FL-Next	tr=Reverse transcriptase; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	35%
Sma3	Retrotransposon protein, putative, unclassified	-	-	2.627e-16	-

Source	Gene names
Sma3	At2g15650; B1110B01.4; CCHC; F11I4_21; F14M2.5; H0112G12.6; H0512B01.8; LOC_Os03g05850; LOC_Os03g26290; LOC_Os03g47410; LOC_Os03g47702; LOC_Os03g56530; LOC_Os03g61660; LOC_Os10g04074; LOC_Os10g26030; LOC_Os10g29420; LOC_Os11g01090; LOC_Os11g06960; LOC_Os1

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	alpha-mannosidase activity	GO:0004559	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	carbohydrate binding	GO:0030246	Molecular Function	-
Sma3	rRNA N-glycosylase activity	GO:0030598	Molecular Function	-
Sma3	mannose metabolic process	GO:0006013	Biological Process	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-
Sma3	negative regulation of translation	GO:0017148	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S8/S53, subtilisin/kexin/sedolisin	IPR000209	-	-
Sma3	BTB/POZ-like	IPR000210	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Glycoside hydrolase, family 38, core	IPR000602	-	-
Sma3	BRCT domain	IPR001357	-	-
Sma3	Aminoacyl-tRNA synthetase, class I, conserved site	IPR001412	-	-
Sma3	Tetratricopeptide TPR-1	IPR001440	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, CCHC-type	IPR001878	-	-
Sma3	Ankyrin repeat	IPR002110	-	-
Sma3	Phosphotransferase system, HPr serine phosphorylation site	IPR002114	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Argonaute/Dicer protein, PAZ	IPR003100	-	-
Sma3	Stem cell self-renewal protein Piwi	IPR003165	-	-
Sma3	HhH-GPD domain	IPR003265	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Chloroplast envelope membrane protein, CemA	IPR004282	-	-
Sma3	Retrotransposon gag protein	IPR005162	-	-
Sma3	Uncharacterised protein family Cys-rich	IPR006461	-	-
Sma3	CS-like domain	IPR007052	-	-
Sma3	Domain of unknown function DUF1336	IPR009769	-	-
Sma3		IPR010256	-	-
Sma3	CCT domain	IPR010402	-	-
Sma3	BTB/POZ fold	IPR011333	-	-
Sma3	Glycosyl hydrolases 38, C-terminal	IPR011682	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	Tetratricopeptide repeat-containing domain	IPR013026	-	-
Sma3	BTB/POZ	IPR013069	-	-
Sma3		IPR013084	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	ABC-2 type transporter	IPR013525	-	-
Sma3	Domain of unknown function DUF1785	IPR014811	-	-
Sma3	Glycoside hydrolase, family 38, central domain	IPR015341	-	-
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	-
Sma3	CS domain	IPR017447	-	-
Sma3	Superoxide dismutase, copper/zinc, binding site	IPR018152	-	-
Sma3	Asp/Glu racemase, active site	IPR018187	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-
Sma3	Tetratricopeptide repeat	IPR019734	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q9M5J7

Fln msg: STOP codon was not found. Distance to subject end: 38 aas, your sequence is shorter than subject: 145 - 542

Fln protein: GVRLASYTDFDWAICASDRKSTSRCYFGLGSAVVSWFSQKQQSVALSSAKAEYMAASLASCEAIWLRKMLFGLFGQLLRPSVIYCDNQSCIKLTENPVFHDRSKHIRIKYHFIRDCVQKGAVKLEYIPTDEQVADILTKALPWGK

Protein Length: 146

Fln nts: ATGGAGTGAGATTGGCAAGTTATACTGATTTTGATTGGGCAATTTGTGCTTCTGATAGGAAGAGCACTTCAAGGTGCTATTTTGGGTTGGGTTCGGCAGTAGTGTCATGGTTCAGCCAGAAGCAGCAGTCAGTAGCATTGAGTTCAGCAAAAGCAGAGTATATGGCAGCCAGTCTAGCTAGTTGTGAGGCCATCTGGCTTCGCAAGATGTTGTTTGGCTTATTTGGTCAGCTGTTGAGACCTTCAGTGATTTACTGTGATAATCAGAGTTGCATTAAACTCACGGAGAATCCAGTATTTCATGACAGGTCAAAGCATATCAGGATCAAATATCATTTCATCAGAGACTGTGTTCAAAAGGGCGCTGTGAAGCTTGAGTATATTCCCACTGATGAGCAGGTTGCAGATATTCTTACCAAAGCCTTACCATGGGGCAAGAA

Fln Alignment:

HA8LWWM01AJVWY___VRLASYTDFDWAICASDRKSTSRCYFGLGSAVVSWFSQKQQSVALSSAKAEYMAASLASCEAIWLRKML--FGLFGQLLRPSVIYCDNQSCIKLTENPVFHDRSKHIRI
Q9M5J7________________VDIHGFVDADWVGDLDHIRSTSGYVFNLFGGAISWMSKIQALVALSTTEAEYMVATHASQGSIWLQRLCSGIGLVQQVVR---LDCEIQSAIFMAKNPAYDSKTNHIDV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain