SustainPineDB

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Assembly info
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene161703

Length: 396 nt

UniGene Fasta

>sp_v3.0_unigene161703
TGTTATTCCCAAAGGGTGGTCTGTAGTGCCATTTCTATGTGCAGTCCATCTTAATGAAGAATTTTACAAGGATGCTCTGAGTTTCAATCCATGGCGTTGGCTGGAGACCGACGTAGAAAATAAAAGCTGGAGAAACAGTGAACTATTTGTTCCGTTCGGAGGAGGAGGTAGATTCTGTCCAGGAGCAGAACTGGCTAGACTTCAGACCTCTCTGTTTCTTTATTATTTTGTCACTAGATACAGGTACACAGATTAGAATAGTACCTTCTTCGCTAAATAGTTATTCTATTTCAATTTATGACTCACAGTTGCATCATTATGTGATGCACTACATTCGAATGTTTCGCACATATCTACTGAATTATGGGTTGTCTCACAGCTAGCTGATTCCATGGA

Ace file of the UniGene sp_v3.0_unigene161703

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Cytochrome P450, putative n=1 Tax=Ricinus communis RepID=B9SHL8_RICCO	-	-	4.0e-28	65%
FL-Next	sp=Abietadienol/abietadienal oxidase; Pinus taeda (Loblolly pine).	-	-	0.0	56%

Source	Gene names
Sma3	At1g73340; CYP720A1; CYP720B1; CYP90A15; CYP90A2; GSVIVT00013859001; POPTRDRAFT_585891; RCOM_1607300; T9L24.44;

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3	WW/Rsp5/WWP	IPR001202	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-
Sma3	Cytochrome P450, E-class, group IV	IPR002403	-	-
Sma3	Beta tubulin, autoregulation binding site	IPR013838	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3		IPR017973	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G73340.1	Cytochrome P450 superfamily protein chr1:27573136-27575273 FORWARD LENGTH=514	3.0e-34	65%
RefSeq	Arabidopsis thaliana	NP_177477.3	Cytochrome P450 superfamily protein [Arabidopsis thaliana]	3.0e-34	65%
RefSeq	Populus trichocarpa	XP_002331913.1	cytochrome P450 [Populus trichocarpa]	1.0e-30	60%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q50EK6

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 26 aas, your sequence is shorter than subject: 85 - 481

Fln protein: VIPKGWSVVPFLCAVHLNEEFYKDALSFNPWRWLETDVENKSWRNSELFVPFGGGGRFCPGAELARLQTSLFLYYFVTRYRYTD*

Protein Length: 86

Fln nts: TGTTATTCCCAAAGGGTGGTCTGTAGTGCCATTTCTATGTGCAGTCCATCTTAATGAAGAATTTTACAAGGATGCTCTGAGTTTCAATCCATGGCGTTGGCTGGAGACCGACGTAGAAAATAAAAGCTGGAGAAACAGTGAACTATTTGTTCCGTTCGGAGGAGGAGGTAGATTCTGTCCAGGAGCAGAACTGGCTAGACTTCAGACCTCTCTGTTTCTTTATTATTTTGTCACTAGATACAGGTACACAGATTAG___AATAGTACCTTCTTCGCTAAATAGTTATTCTATTTCAATTTATGACTCACAGTTGCATCATTATGTGATGCACTACATTCGAATGTTTCGCACATATCTACTGAATTATGGGTTGTCTCACAGCTAGCTGATTCCATGGA

Fln Alignment:

HA8LWWM01DZO0C___VIPKGWSVVPFLCAVHLNEEFYKDALSFNPWRW-LETDVENKSWRNSELFVPFGGGGRFCPGAELARLQTSLFLYYFVTRYRY
Q50EK6________________LIPKGWVVFAFLTATHLDEKFHNEALTFNPWRWELDQDVSN-----NHLFSPFGGGARLCPGSHLARLELALFLHIFITRFRW

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain