SustainPineDB

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Assembly info
Unigenes
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene161415

Length: 365 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene161415
CGGGTTGATATCAATGCTGAAGCTGAAGCTCAAAGAGCTCTGCTTGATTACCTTCACGACACAAGGAACCTGAATTTCACACATGCTGAGTATATCGCGATGAATGCCCCTAGTTTTGTGAAGAAACTGTTAGCCAAAGCCAGAGCAGGAAAAGATATTAGAAAAACAGTCGATAAGTATCTTCAGTACAATCCCATCAATGAATTTGAGCCCTTCTTCGAAAGCATTGGTATAAAACCTTCTGAGATCGGTGCCCTATTGACAACTAATCAAATATGTCTCAGCGAAAACACGGTATTGATGCATAATGTCTCCACACTATGGAACTTTGGGATTCCCAGGAACAAGCTTGGGCATATATACAC

Ace file of the UniGene sp_v3.0_unigene161415 (antisense)

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Mitochondrial transcription termination factor family protein [Arabidopsis thaliana] dbj\|BAB09816.1\| unnamed protein product [Arabidopsis thaliana] gb\|AED91069.1\| Mitochondrial transcription termination factor family protein [Arabidopsis thaliana]	-	-	1.0e-19	41%
FL-Next	tr=Predicted protein; subsp. trichocarpa).	-	-	0.0	48%

Source	Gene names
Sma3	GSVIVT00025362001; GSVIVT00031934001; POPTRDRAFT_576278; POPTRDRAFT_576279; POPTRDRAFT_586736; RCOM_0278030; RCOM_0278040; RCOM_0278050; VITISV_031366;

Source	GOs	Term	Type	e value	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	0.0	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Mitochodrial transcription termination factor-related	IPR003690	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Source	Species	ID	Description	e value	Identity
RefSeq	Populus trichocarpa	XP_002332130.1	predicted protein [Populus trichocarpa]	8.0e-36	48%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: B9NA49

Fln msg: Distance to subject end: 394 aas, your sequence is shorter than subject: 121 - 577

Fln protein: RVDINAEAEAQRALLDYLHDTRNLNFTHAEYIAMNAPSFVKKLLAKARAGKDIRKTVDKYLQYNPINEFEPFFESIGIKPSEIGALLTTNQICLSENTVLMHNVSTLWNFGIPRNKLGHIY

Protein Length: 122

Fln nts: CGGGTTGATATCAATGCTGAAGCTGAAGCTCAAAGAGCTCTGCTTGATTACCTTCACGACACAAGGAACCTGAATTTCACACATGCTGAGTATATCGCGATGAATGCCCCTAGTTTTGTGAAGAAACTGTTAGCCAAAGCCAGAGCAGGAAAAGATATTAGAAAAACAGTCGATAAGTATCTTCAGTACAATCCCATCAATGAATTTGAGCCCTTCTTCGAAAGCATTGGTATAAAACCTTCTGAGATCGGTGCCCTATTGACAACTAATCAAATATGTCTCAGCGAAAACACGGTATTGATGCATAATGTCTCCACACTATGGAACTTTGGGATTCCCAGGAACAAGCTTGGGCATATATACAC

Fln Alignment:

HA8LWWM01BZQW2___RVDINAEAEAQRALLDYLHDTRNLNFTHAEYIAMNAPSFVKKLLAKARAGKDIRKTVDKYLQYNPINEFEPFFESIGIKPSEIGALLTTNQICLSENTVLMHNVSTLWNFGIPRNKLGHIY
B9NA49________________RVSRVARTDAQRVLFDYLHCTRNFDFNDAEHISKNSPHFIENLLTKIDNDKDVVRLLNKFLRYNPINEFEPFFESLGLRPSEVPSVLPPHLMYLGDNDMLLENFHVLCNYGIPRSKIGRMY

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain