SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene161400

Length: 381 nt

UniGene Fasta

>sp_v3.0_unigene161400
TCCCATTGTGACCACTATTTGTGCTTTATTGACTCCTCATCCAATGACAGAGCTTTGAGTAAAGGGATCTTACCAACATCACAAGGAGTTGAGGGCTGCACAGGGGCTTGAGCATAATATAGCAGGAACTCAGTTACATGTTGTAGGAACCGATTATGATGCGGAAGATCTCAAGGATGAAGCAATGCAAGATATGAAAAATGTAATATCTTGGATTGACAAGATTGGCAAGGGAGTTTGTGTGAAAGCTTGAACTCTGGGACCTTTGGAAGCTTTATTTGAGTTCTTGAAGAGTCCAGCCGTAAACATCCCTGTCAGTGGGATCAACATGGGTCATGTGCATAAAATAGATATCATGCGGTCTAATGTGATGCTTGAAAT

Ace file of the UniGene sp_v3.0_unigene161400

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative translation initiation factor IF-2 [Arabidopsis thaliana]	-	-	2.0e-40	66%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	76%
Sma3	Putative translation initiation factor IF-2	-	-	1.679e-14	-

Source	Gene names
Sma3	At1g21160; At1g76810; At1g76820; At2g27700; CHLREDRAFT_141272; EIF5Ba; F28O16.18; F28O16.19; F28O16.9; GSVIVT00002292001; LOC_Os12g31880; MICPUCDRAFT_37808; MICPUN_55463; OSTLU_48964; Os05g0592600; Os12g0503200; OsI_21217; OsI_38435; OsJ_02367; OsJ_02370;

Source	GOs	Term	Type	Identity
Sma3	tRNA binding	GO:0000049	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	translation initiation factor activity	GO:0003743	Molecular Function	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Ribosomal protein L5	IPR002132	-	-
Sma3	tRNA-binding domain	IPR002547	-	-
Sma3	Ribosomal protein S1, RNA-binding domain	IPR003029	-	-
Sma3	Mitochodrial transcription termination factor-related	IPR003690	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Translation initiation factor IF- 2	IPR015760	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G76820.1	eukaryotic translation initiation factor 2 (eIF-2) family protein chr1:28837796-28842343 FORWARD LENGTH=1166	66%
RefSeq	Arabidopsis thaliana	NP_565140.4	translation initiation factor eIF-5B [Arabidopsis thaliana]	66%
RefSeq	Populus trichocarpa	XP_002318326.1	predicted protein [Populus trichocarpa]	68%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NZE9

Fln msg: Distance to subject end: 195 aas, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 107 - 315

Fln protein: VKGSYQHHKELRAAQGLEHNIAGTQLHVVGTDYDAEDLKDEAMQDMKNVISWIDKIGKGVCVKA*TLGPLEALFEFLKSPAVNIPVSGINMGHVHKIDIMRSNVMLE

Protein Length: 108

Fln nts: TCCCATTGTGACCACTATTTGTGCTTTATTGACTCCTCATCCAATGACAGAGCTTTGAGTAAAGGGATCTTACCAACATCACAAGGAGTTGAGGGCTGCACAGGGGCTTGAGCATAATATAGCAGGAACTCAGTTACATGTTGTAGGAACCGATTATGATGCGGAAGATCTCAAGGATGAAGCAATGCAAGATATGAAAAATGTAATATCTTGGATTGACAAGATTGGCAAGGGAGTTTGTGTGAAAGCTTGAACTCTGGGACCTTTGGAAGCTTTATTTGAGTTCTTGAAGAGTCCAGCCGTAAACATCCCTGTCAGTGGGATCAACATGGGTCATGTGCATAAAATAGATATCATGCGGTCTAATGTGATGCTTGAAAT

Fln Alignment:

HA8LWWM01EYCTP___MTEL*VKGSYQHHKELRAAQG-------LEHNIAGTQLHVVGTDYDAEDLKDEAMQDMKNVISWIDKIGKGVCVKA*TLGPLEALFEFLKSPAVNIPVSGINMGHVHKIDIMRSNVMLE
A9NZE9________________MKELRIKGSYQHHKELKAAQGIKITAQGLEHAIAGTQLHVVGPDDDLEDLKDEAMQDMKNVMSRIDKTGEGVCVQASTLGSLEALLEFLKSPAVNIPVSGISIGPVHKKDIMRSSVMLE

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain