SustainPineDB

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Assembly info
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SSRs
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ECs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene161349

Length: 413 nt

UniGene Fasta

>sp_v3.0_unigene161349
TTGAATGGGTGTGGGATTTGTATGGCAAACACTGTTTGCTGGATGCGGCAGACAATAGATTAAATGGAGGATTCGATGCCAGAGAAATGATACGGCTCATGGTTGTTTGATTATGGTGCTGCAATCCTGATTTTAAACAGAGGCCCAAAATGATACAAGTAGTTCAGACATTGAAGTTTGAAGCTGTGTTGCCTCGCCTCCCATCCATGATGCCCCGATTCATTGTTCTCCAACCGGAATTGCATTCAGATCGATATTATTCGTCGGAATTTCTTGATTCAGTGCGCGAACCTGCGACAGAGCCCTGTTTGACAGCGCACCAAAATGTGGAAGAGCTGTTTGTCCCGGTAACTCTCTGATTATCTCTGTAACTATTATTTCACATTGTGTGGAGGCTAGTCAATGCTCACAAC

Ace file of the UniGene sp_v3.0_unigene161349

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Kinase, putative n=1 Tax=Ricinus communis RepID=B9SMM3_RICCO	-	-	2.0e-18	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	39%
Sma3	Chromosome undetermined scaffold_234, whole genome shotgun sequence	-	-	7.803e-07	-

Source	Gene names
Sma3	GSVIVT00001512001; GSVIVT00008560001; GSVIVT00008562001; GSVIVT00009439001; GSVIVT00009442001; GSVIVT00011858001; Os01g0779300; OsI_03974; P0010B10.12; RCOM_0818480; RCOM_1381520; VITISV_007745; VITISV_007747; VITISV_009245; VITISV_020633;

Source	GOs	Term	Type	Identity
Sma3	chromatin	GO:0000785	Cellular Component	-
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	chromatin binding	GO:0003682	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	aspartic-type endopeptidase activity	GO:0004190	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	chromatin assembly or disassembly	GO:0006333	Biological Process	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain	IPR000194	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Chromo domain/shadow	IPR000953	-	-
Sma3	Legume lectin, alpha chain, conserved site	IPR000985	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Retroviral aspartyl protease	IPR013242	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G10530.1	Concanavalin A-like lectin protein kinase family protein chr5:3324978-3326933 REVERSE LENGTH=651	6.0e-15	47%
RefSeq	Arabidopsis thaliana	NP_196615.1	concanavalin A-like lectin kinase-like protein [Arabidopsis thaliana]	8.0e-15	47%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LLJ6

Fln msg: query STOP codon is far from subject stop. Distance to subject end: 24 aas, your sequence is shorter than subject: 119 - 704

Fln protein: EWVWDLYGKHCLLDAADNRLNGGFDAREMIRLMVV*LWCCNPDFKQRPKMIQVVQTLKFEAVLPRLPSMMPRFIVLQPELHSDRYYSSEFLDSVREPATEPCLTAHQNVEELFVPVTL*

Protein Length: 120

Fln nts: TTGAATGGGTGTGGGATTTGTATGGCAAACACTGTTTGCTGGATGCGGCAGACAATAGATTAAATGGAGGATTCGATGCCAGAGAAATGATACGGCTCATGGTTGTTTGATTATGGTGCTGCAATCCTGATTTTAAACAGAGGCCCAAAATGATACAAGTAGTTCAGACATTGAAGTTTGAAGCTGTGTTGCCTCGCCTCCCATCCATGATGCCCCGATTCATTGTTCTCCAACCGGAATTGCATTCAGATCGATATTATTCGTCGGAATTTCTTGATTCAGTGCGCGAACCTGCGACAGAGCCCTGTTTGACAGCGCACCAAAATGTGGAAGAGCTGTTTGTCCCGGTAACTCTCTGA___TTATCTCTGTAACTATTATTTCACATTGTGTGGAGGCTAGTCAATGCTCACAAC

Fln Alignment:

HA8LWWM01A0DGT___EWVWDLYGKHCLLDAADNRLNGGFDAREMIRLMVV*LWCCNPDFKQRPKMIQVVQTLKFEAVLPRL
B8LLJ6________________EWVWKLHTEGRLVDASDPNLGKAYDMCQIEKVLKLGLLCCNPEPQSRLGMRHVCQILEGEAPLPDL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain