SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene161299

Length: 214 nt

UniGene Fasta

>sp_v3.0_unigene161299
GCGCAAGTATGGATCCAAAAGAGAGCACAGCTGTCACTGAAATCCCTTCCTACTTCATATGCCCCATATCTATGCAGATAATGAGAGACCCCATTACTGTTTGCACTGGTATCACATACGATCGAGAAAGTATGGAGAAATGGGTCTATTCTTGCGGCAAGAACACATGCCCTGCAACAATGCAAGTAATGTCCAACTTCGATATGATTCCCAA

Ace file of the UniGene sp_v3.0_unigene161299

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	E3 ubiquitin-protein ligase PUB22 [Arabidopsis thaliana] sp\|Q9SVC6.1\|PUB22_ARATH RecName: Full=E3 ubiquitin-protein ligase PUB22; AltName: Full=Plant U-box protein 22; AltName: Full=U-box domain-containing protein 22 emb\|CAB43434.1\| putative protein [Arab	-	-	4.0e-16	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	88%
Sma3	Chromosome chr8 scaffold_99, whole genome shotgun sequence	-	-	1.105e-08	-

Source	Gene names
Sma3	At3g52450; F22O6_170; GSVIVT00017518001; GSVIVT00017530001; GSVIVT00038904001; GSVIVT00038906001; GSVIVT00038907001; H0723C07.7; OJ1743_B12.39; OSJNBa0070M12.4; OSJNBa0086O06.11; Os02g0690600; Os04g0589700; Os04g0686000; OsI_08535; OsI_17178; OsI_18000; O

Source	GOs	Term	Type	Identity
Sma3	ubiquitin ligase complex	GO:0000151	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	respiratory burst involved in defense response	GO:0002679	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to chitin	GO:0010200	Biological Process	-
Sma3	protein ubiquitination	GO:0016567	Biological Process	-
Sma3	modification-dependent protein catabolic process	GO:0019941	Biological Process	-
Sma3	protein autoubiquitination	GO:0051865	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	U box domain	IPR003613	-	0.0	-
Sma3	Armadillo-like helical	IPR011989	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G52450.1	PUB22 plant U-box 22 chr3:19440943-19442250 REVERSE LENGTH=435	2.0e-21	62%
RefSeq	Arabidopsis thaliana	NP_190813.1	E3 ubiquitin-protein ligase PUB22 [Arabidopsis thaliana]	2.0e-21	62%
RefSeq	Populus trichocarpa	XP_002323382.1	predicted protein [Populus trichocarpa]	7.0e-21	60%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: A9NXN2

Fln msg: Distance to subject end: 348 aas, your sequence is shorter than subject: 68 - 417

Fln protein: MDPKESTAVTEIPSYFICPISMQIMRDPITVCTGITYDRESMEKWVYSCGKNTCPATMQVMSNFDMIP

Protein Length: 69

Fln nts: GCGCAAGT_-_ATGGATCCAAAAGAGAGCACAGCTGTCACTGAAATCCCTTCCTACTTCATATGCCCCATATCTATGCAGATAATGAGAGACCCCATTACTGTTTGCACTGGTATCACATACGATCGAGAAAGTATGGAGAAATGGGTCTATTCTTGCGGCAAGAACACATGCCCTGCAACAATGCAAGTAATGTCCAACTTCGATATGATTCCCAA

Fln Alignment:

HA8LWWM01ENN6H___MDPKESTAVTEIPSYFICPISMQIMRDPITVCTGITYDRESMEKWVYSCGKNTCPATMQVMSNFDMIP
A9NXN2________________MDPKENTAVAEIPSYFICPISMQIMRDPITVCTSITYDRESMEKWIYSCGKNTCPATMQVMPNYNMTP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain