SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene161131

Length: 368 nt

UniGene Fasta

>sp_v3.0_unigene161131
CAGACATTCAACTGAGTCTTGCGACTTTGGAGGAGGTTTTTTTAAACATTGCAAGGCAAGCAGAAGTCGAGACTGCAGCTGCTGATGGAAGCTTTACTACACTGAACTTACATTCTGGAACCTCAATTCAGGTTCCCACTGGGGCAAGGTTTGCACTGATTCCTGGAACAGAATCAGAAGAAAATCCCGGAGGATTGATGGTCGAAGTACATTGGGACCAAGATGACACCGGAACCCTTTGTATTTCTGGCCACTCTAATGAAATACCAGTGCCACCACATCTTGTAAATACAGAACGCGTGACATCATTTAGCGGAAACCGATCAAGCAGGTCTTTTACAAGAACAACTTCCAGCCACGTTGCACCT

Ace file of the UniGene sp_v3.0_unigene161131

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Abc transporter, putative n=1 Tax=Ricinus communis RepID=B9R966_RICCO	-	-	8.0e-33	71%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Sma3	ABC transporter family, retinal flippase subfamily	-	-	1.74e-08	-

Source	Gene names
Sma3	ATH1; ATH11; ATH15; At3g47730; At5g61690; At5g61730; GSVIVT00000113001; K11J9.22; MAC9.4; OJ1198_B10.9; Os08g0398000; OsI_29139; OsJ_27205; PHYPADRAFT_190702; POPTRDRAFT_581361; POPTRDRAFT_823332; PtrATH1; PtrATH2; RCOM_1514310; T23J7.60; VITISV_033311; p

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATPase activity	GO:0016887	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ABC transporter-like	IPR003439	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G47730.1	ATATH1, ATH1, ABCA2 ATP-binding cassette A2 chr3:17594342-17598828 REVERSE LENGTH=983	8.0e-38	64%
RefSeq	Arabidopsis thaliana	NP_190357.2	ABC transporter A family member 2 [Arabidopsis thaliana]	1.0e-37	64%
RefSeq	Populus trichocarpa	XP_002330122.1	ABC transporter family, retinal flippase subfamily [Populus trichocarpa]	4.0e-36	69%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: C0PRA1

Fln msg: Distance to subject end: 17 aas, your sequence is shorter than subject: 122 - 788

Fln protein: DIQLSLATLEEVFLNIARQAEVETAAADGSFTTLNLHSGTSIQVPTGARFALIPGTESEENPGGLMVEVHWDQDDTGTLCISGHSNEIPVPPHLVNTERVTSFSGNRSSRSFTRTTSSHVAP

Protein Length: 123

Fln nts: CAGACATTCAACTGAGTCTTGCGACTTTGGAGGAGGTTTTTTTAAACATTGCAAGGCAAGCAGAAGTCGAGACTGCAGCTGCTGATGGAAGCTTTACTACACTGAACTTACATTCTGGAACCTCAATTCAGGTTCCCACTGGGGCAAGGTTTGCACTGATTCCTGGAACAGAATCAGAAGAAAATCCCGGAGGATTGATGGTCGAAGTACATTGGGACCAAGATGACACCGGAACCCTTTGTATTTCTGGCCACTCTAATGAAATACCAGTGCCACCACATCTTGTAAATACAGAACGCGTGACATCATTTAGCGGAAACCGATCAAGCAGGTCTTTTACAAGAACAACTTCCAGCCACGTTGCACCT

Fln Alignment:

HA8LWWM01CWR9S___DIQLSLATLEEVFLNIARQAEVETAAADGSFTTLNLHSGTSIQVPTGARFALIPGTESEENPGGLMVEVHWDQDDTGTLCISGHSNEIPVPPHLVNTERV
C0PRA1________________DIQLSLATLEEIFLKIARQAEVETAAADGSFTILNLPSGTLIQVPTGARFVVIPGTESEENPGGLMVEVQWDHDDTGALCISGHSNEIPVPPHLVNTERV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain