SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
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InterPros
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene161130

Length: 498 nt

UniGene Fasta

>sp_v3.0_unigene161130
TGTTCCAGGCTGGAGGGGCTCCCAGACTGGGTGGGGGGCTGACGAACCTAGAGTATATTGACTTGTCCATGTGCTCTAGGTTGCAGATCCTTCCAAATTCTTTTGGAGACTTAACTACCCTTCGTTGTATTGACTTGTCCCATTGGTCGAATTTGGAGAACCTGCCATCCGCCCTTGGAAACTTAACTAACCTTCATAAGATTCACTTGTCTCAGTGTTCCAATTTGAAGCTTCTTCCAGATTCCTTCCGAAACTTAACGAGCCTTCATCATATTGACTTGTCTTGGTGCTCCAACTTGCGACTGCTCCCGGATTCCTTTGGGGAATTAAGGAACCTCCGACATGCTAACTTAACTGGGTGCTTCAATTTAGAAACGTTTCCCGAAGGAGTTTGGGAACGTGACGAATCCTAAGCCTTAATTAGTCGACTGGGTTGTCACTTGTTATTACCAGCTGGTCCACTGGTTTGTCACTTGTCATTACCCGCTGGACGTTGGA

Ace file of the UniGene sp_v3.0_unigene161130

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	NBS/LRR (Fragment) n=1 Tax=Pinus taeda RepID=Q8L8J2_PINTA	-	-	3.0e-27	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	38%
Sma3	NBS/LRR	-	-	5.215e-09	-

Source	Gene names
Sma3	At1g69550; F10D13_24; PHYPADRAFT_143437;

Source	GOs	Term	Type	Identity
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	apoptotic process	GO:0006915	Biological Process	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Toll/interleukin-1 receptor homology (TIR) domain	IPR000157	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	NB-ARC	IPR002182	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Leucine-rich repeat 3	IPR011713	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G69550.1	disease resistance protein (TIR-NBS-LRR class) chr1:26148836-26153374 REVERSE LENGTH=1400	5.0e-27	48%
RefSeq	Arabidopsis thaliana	NP_564971.2	TIR-NBS-LRR class disease resistance protein [Arabidopsis thaliana]	7.0e-27	48%

Full-Lengther Next Prediction

Fln status: Putative N-terminus

Fln database: coniferopsida.fasta

Fln subject: D5AB91

Fln msg: Unexpected STOP codon at 3' end. Distance to subject end: 216 aas, W2: There is no M at the beginning, your sequence is shorter than subject: 137 - 482

Fln protein: FQAGGAPRLGGGLTNLEYIDLSMCSRLQILPNSFGDLTTLRCIDLSHWSNLENLPSALGNLTNLHKIHLSQCSNLKLLPDSFRNLTSLHHIDLSWCSNLRLLPDSFGELRNLRHANLTGCFNLETFPEGVWERDES*

Protein Length: 138

Fln nts: TGTTCCAGGCTGGAGGGGCTCCCAGACTGGGTGGGGGGCTGACGAACCTAGAGTATATTGACTTGTCCATGTGCTCTAGGTTGCAGATCCTTCCAAATTCTTTTGGAGACTTAACTACCCTTCGTTGTATTGACTTGTCCCATTGGTCGAATTTGGAGAACCTGCCATCCGCCCTTGGAAACTTAACTAACCTTCATAAGATTCACTTGTCTCAGTGTTCCAATTTGAAGCTTCTTCCAGATTCCTTCCGAAACTTAACGAGCCTTCATCATATTGACTTGTCTTGGTGCTCCAACTTGCGACTGCTCCCGGATTCCTTTGGGGAATTAAGGAACCTCCGACATGCTAACTTAACTGGGTGCTTCAATTTAGAAACGTTTCCCGAAGGAGTTTGGGAACGTGACGAATCCTAAGCCTTAATTAGTCGACTGGGTTGTCACTTGTTATTACCAGCTGGTCCACTGGTTTGTCACTTGTCATTACCCGCTGGACGTTGGA

Fln Alignment:

HA8LWWM01CI3WD___GGLTNLEYIDLSMCSRLQILPNSFGDLTTLRCIDLSHWSNLENLPSALGNLTNLHKIHLSQCSNLKLLPDSFRNLTSLHHIDLSWCSNLRLLPDSFGELRNLRHANLTGCFNLETFPEGV
D5AB91________________GNLTNLHHINLTLCRKLERLPDSFGSLMNLHHLDLSLCKKLERLPNSFGSCNRIKYLNSSCCSNLTISSDTLGNIRTLEHIDFSGCGKIELWPLQLAHQRSLKILKLTGT-NIKELPSAI

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain