SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene160984

Length: 222 nt

UniGene Fasta

>sp_v3.0_unigene160984
TGAACTAAATTACTAATTAATGTCTTTTTCTTTGCAGCACACTGGTGGGAGTCATTTGGCGGCCAATGCCATCAATTGCAAAGGTTTGCAATTAGATTCCTCTACCAAACTTGCAATGCTTCAGGTTGTGCGCACAATTGGCCTGTTTTTGAGCACATATACACAAAGAAGAGAAATTGTTTGGAACAGAAATGGTTGAATGATCTTGTCTTCATGTAATAC

Ace file of the UniGene sp_v3.0_unigene160984

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Putative transposase n=1 Tax=Arabidopsis thaliana RepID=O81190_ARATH	-	-	2.0e-12	58%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	65%

Source	Gene names
Sma3	GSVIVT00000858001; GSVIVT00001200001; GSVIVT00034220001; VITISV_016801; VITISV_031335; VITISV_032284; VITISV_035916; VITISV_041875;

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	protein dimerization activity	GO:0046983	Molecular Function	-
Sma3	DNA integration	GO:0015074	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Integrase, catalytic core	IPR001584	-	-
Sma3	Zinc finger, BED-type predicted	IPR003656	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	Domain of unknown function DUF659	IPR007021	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	HAT dimerisation	IPR008906	-	-
Sma3		IPR011523	-	-
Sma3	Reverse transcriptase, RNA-dependent DNA polymerase	IPR013103	-	-
Sma3	Zinc finger, C2H2-like	IPR015880	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT5G33406.1	hAT dimerisation domain-containing protein / transposase-related chr5:12676126-12678403 REVERSE LENGTH=509	1.0e-15	48%
RefSeq	Arabidopsis thaliana	NP_680299.4	hAT family dimerization domain-containing protein [Arabidopsis thaliana]	2.0e-15	48%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: coniferopsida.fasta

Fln subject: D5ADK7

Fln msg: Unexpected stop codon in the beginning of your sequence, Unexpected STOP codon at 3' end. Distance to subject end: 114 aas, your sequence is shorter than subject: 73 - 250

Fln protein: *TKLLINVFFFAAHWWESFGGQCHQLQRFAIRFLYQTCNASGCAHNWPVFEHIYTKKRNCLEQKWLNDLVFM*

Protein Length: 74

Fln nts: TGAACTAAATTACTAATTAATGTCTTTTTCTTTGCAGCACACTGGTGGGAGTCATTTGGCGGCCAATGCCATCAATTGCAAAGGTTTGCAATTAGATTCCTCTACCAAACTTGCAATGCTTCAGGTTGTGCGCACAATTGGCCTGTTTTTGAGCACATATACACAAAGAAGAGAAATTGTTTGGAACAGAAATGGTTGAATGATCTTGTCTTCATGTAATAC

Fln Alignment:

HA8LWWM01EWS7K___AHWWESFGGQCHQLQRFAIRFLYQTCNASGCAHNWPVFEHIYTKKRNCLEQKWLNDLVFM
D5ADK7________________AYWWQQFGSQCHELHKFAVRILSQTCSAFGCERNWSVFERIHTKKRNRLEQKRLNDIVFV

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain