SustainPineDB

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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene160949

Length: 483 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene160949
AGCAAGAGGCCTTTGTTACAGTTATGATAGCAAATACACTAAAGGCCATAAGTGTGCTGAGAAGAAATTATTCTACATAGATTGTGAAGAGGAAGAAGAAAGGGAGCAGGAAAGGTCAAAATAAGAGGATATACTCCAGGAACAAAGCCTAGATGAAGAACAAATAAATACAACTATATCTTGTAATGCATTAGCATGAATTACCACTCCTCAAACCATCAAGATAGAAGGACAAATCAAGAAGAAAAAGGTAACAGTTTTGATTGATTCAGGAAGCACCCACAATTTTATTCATTGTAAGGTAGCAAAATAATTGAATTGCTTCCTATATCCAGCACCAGAGTGTCAAGTAATGATTGCAAATGGAGGAACAATAAATTTCTCTGGAAAGTGACTAGCCCAATGCTTTCCATTCCAATGGGAGGTGCTGATGTTGTACTAGGAGTCCAATGGCTACAATCCTTGGGTACAATAGCTTTTAAT

Ace file of the UniGene sp_v3.0_unigene160949 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Gypsy/Ty-3 retroelement polyprotein; 69905-74404 n=1 Tax=Arabidopsis thaliana RepID=Q9LHM4_ARATH	-	-	4.0e-16	34%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	37%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: A5C2E0

Fln msg: Separated hits, possible frame ERROR between 391 and 403, Distance to subject end: 389 aas, your sequence is shorter than subject: 161 - 793

Fln protein: ARGLCYSYDSKYTKGHKCAEKKLFYIDCEEEEEREQERSK*EDILQEQSLDEEQINTTISCNALA*ITTPQTIKIEGQIKKKKVTVLIDSGSTHNFIHCKVAK*LNCFLYPAPECQVMIANGGTINFSGxxxxxMLSIPMGGADVVLGVQWLQSLGTIAFN

Protein Length: 162

Fln nts: AGCAAGAGGCCTTTGTTACAGTTATGATAGCAAATACACTAAAGGCCATAAGTGTGCTGAGAAGAAATTATTCTACATAGATTGTGAAGAGGAAGAAGAAAGGGAGCAGGAAAGGTCAAAATAAGAGGATATACTCCAGGAACAAAGCCTAGATGAAGAACAAATAAATACAACTATATCTTGTAATGCATTAGCATGAATTACCACTCCTCAAACCATCAAGATAGAAGGACAAATCAAGAAGAAAAAGGTAACAGTTTTGATTGATTCAGGAAGCACCCACAATTTTATTCATTGTAAGGTAGCAAAATAATTGAATTGCTTCCTATATCCAGCACCAGAGTGTCAAGTAATGATTGCAAATGGAGGAACAATAAATTTCTCTGGAAAxxxxxxxxxxxxAATGCTTTCCATTCCAATGGGAGGTGCTGATGTTGTACTAGGAGTCCAATGGCTACAATCCTTGGGTACAATAGCTTTTAAT

Fln Alignment:

HA8LWWM01EYXQK___ARGLCYSYDSKYTKGHKCAEKKLFYIDCXXXXXXXXXXXXXEDILQEQSLDEEQINTTISCNALA*ITTPQTIKIEGQIKKKKVTVLIDSGSTHNFIHCKVAK*LNCFLYPAPECQVMIANGGTINFSGKxxxxMLSIPMGGADVVLGVQWLQSLGTIAFN
A5C2E0________________AQGLCFNCDDKFTVGHKCRGLQLLLLE----ENSSPNKEDDIDEEIEEPAINEQIEPEISFHALTGWSTPKTMRITAKIGQHEVVVLIDSGSTHNFISEKVADMLHLPVVPTKPFTVKVVNGTPLKCQGRxxxxLYSLPLTGLDLVLGVQWLEQLGTVVCN

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain