SustainPineDB

All assemblies
Assembly info
Unigenes
SNPs
SSRs
Descriptions
GOs
ECs
KEGGs
InterPros
miRNAs

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene160940

Length: 490 nt

UniGene Fasta

>sp_v3.0_unigene160940
TTTTCCTGAACCAGAAAGAAATCGTTGAAGTGGCCGAGAAAGTGGGTTACAGAGTCATTGTTGTTTCGCCAAATGTGAACACCCCGATGAAAGAAATGTACACAATTATCAATTCCTGCGATGTTTTCATGGGAATTCATGGCGCGGGATTGACACATTTTCTGTTTCTTCCGCCGGGGGCCGTGTTCGTACAGGTGGTCCCTCTGGGAATAGGGTGGGCTTCTCGGACTTTCTTCAGAAAGCCCGCCATGAAAATGGGTTCGATCTCATACCTTGAATACCCAATCCTGCCGCAGGAAAGCTCGTTGTATGATGAGTATCCCAAGGATCATCTGTATCTGAGGGATCCAAGGTCTGTGAACGCTAAAGGGTGGGAGGAAACGAAGAAGGTGTACCTGGACAATCAGAATGTGAAATTGCATTTGCCTCGCTTAGAGAGAATGTTCATCAAAGCACTGGACCTCATTCACTCCAGAAGTAACGTGAATTG

Ace file of the UniGene sp_v3.0_unigene160940

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	transferase, transferring glycosyl groups	-	-	3.0e-39	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	46%
Sma3	Glycosyltransferase	-	-	7.188e-14	-

Source	Gene names
Sma3	At2g03370; At2g41640; At2g41640/T32G6.16; B1111E11.20; F28O9.230; GSVIVT00017758001; GSVIVT00025625001; LOC_Os10g35020; OJ1116_E03.25-1; OJ1116_E03.25-2; OJ1126_G08.49; OJ1477_F01.102; OSJNBa0051D19.6; OSJNBb0037J12.3-1; OSJNBb0037J12.3-2; Os01g0498300; O

Source	GOs	Term	Type	e value	Identity
Sma3	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyltransferase AER61, uncharacterised	IPR007657	-	0.0	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G41640.1	Glycosyltransferase family 61 protein chr2:17360654-17362391 FORWARD LENGTH=500	50%
RefSeq	Arabidopsis thaliana	NP_565952.1	Glycosyltransferase family 61 protein [Arabidopsis thaliana]	50%
RefSeq	Populus trichocarpa	XP_002323324.1	predicted protein [Populus trichocarpa]	50%

Full-Lengther Next Prediction

Fln status: Putative C-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LR53

Fln msg: STOP codon was not found. Distance to subject end: 2 aas, your sequence is shorter than subject: 162 - 456

Fln protein: FLNQKEIVEVAEKVGYRVIVVSPNVNTPMKEMYTIINSCDVFMGIHGAGLTHFLFLPPGAVFVQVVPLGIGWASRTFFRKPAMKMGSISYLEYPILPQESSLYDEYPKDHLYLRDPRSVNAKGWEETKKVYLDNQNVKLHLPRLERMFIKALDLIHSRSNVN

Protein Length: 163

Fln nts: TTTTCCTGAACCAGAAAGAAATCGTTGAAGTGGCCGAGAAAGTGGGTTACAGAGTCATTGTTGTTTCGCCAAATGTGAACACCCCGATGAAAGAAATGTACACAATTATCAATTCCTGCGATGTTTTCATGGGAATTCATGGCGCGGGATTGACACATTTTCTGTTTCTTCCGCCGGGGGCCGTGTTCGTACAGGTGGTCCCTCTGGGAATAGGGTGGGCTTCTCGGACTTTCTTCAGAAAGCCCGCCATGAAAATGGGTTCGATCTCATACCTTGAATACCCAATCCTGCCGCAGGAAAGCTCGTTGTATGATGAGTATCCCAAGGATCATCTGTATCTGAGGGATCCAAGGTCTGTGAACGCTAAAGGGTGGGAGGAAACGAAGAAGGTGTACCTGGACAATCAGAATGTGAAATTGCATTTGCCTCGCTTAGAGAGAATGTTCATCAAAGCACTGGACCTCATTCACTCCAGAAGTAACGTGAATTG

Fln Alignment:

HA8LWWM01AMYD7___LNQKEIVEVAEKVGYRVIVVSPNVNTPMKEMYTIINSCDVFMGIHGAGLTHFLFLPPGAVFVQVVPLGIGWASRTFFRKPAMKMGSISYLEYPILPQESSLYDEYPKDHLYLRDPRSVNAKGWEETKKVYLDNQNVKLHLPRLERMFIKA
B8LR53________________LNLKEVVGLAEQLGFNVTVWKPLRTTELKTTYALLNSSHVLLGVHGAALTHFLFMRPGSVFIQVIPLGTEWAAHTYFGEPAERMG-FQYIGYKIRLEESTLSHKYSKNDIILTNPRAVVQQGWAVTKQIYLESQDVIINLSRMKRVLINA

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain