SustainPineDB

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Assembly info
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene160904

Length: 403 nt

UniGene Fasta

>sp_v3.0_unigene160904
AGTTTTCAGATATTGAAAATTCAGCTGTCTGTCACTATAATGGAAACATGAAGCCTTGGTTAGAGATAGCAATGAGCAAATATAGATCTTACTGGACAAAATATGTAAAATTTGATCATCCATATTTACAACAATGCAATATCAGTTAAATGGTTAGCATTTGCTATGTCAGTACTTGTCGGAGGAAGTGCATTTATATCCGTATTCACTTTGGTCCGTTTTCTGTTTCTATGCATATGTCCATGGAGTTCAGGATATCTGTATCTATTCATTTGTCGATGGAGATCAGGACATCTGTATCTATTCATTTGTCCATGGAGTTTAAGACAGATTAAGTGATGGCAAAATTGAAGCCAATTTTTTTGATTCTGGAAGGCAAAAACAATTGACAAGTGACTGCCTC

Ace file of the UniGene sp_v3.0_unigene160904

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Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	alpha-1,4-galacturonosyltransferase 1 [Arabidopsis thaliana] sp\|Q9LE59.1\|GAUT1_ARATH RecName: Full=Alpha-1,4-galacturonosyltransferase 1; AltName: Full=Galacturonosyltransferase 1; AltName: Full=Like glycosyl transferase 1 emb\|CAB71043.1\| putative protein	-	-	4.0e-18	82%
FL-Next	sp=Polygalacturonate 4-alpha-galacturonosyltransferase; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	82%
Sma3	Glycosyltransferase QUASIMODO1, putative	-	-	1.058e-07	-

Source	Gene names
Sma3	At3g61130; B1142B04.29; GSVIVT00026306001; GSVIVT00036268001; LGT1; MtrDRAFT_AC161399g30v2; OJ1254_E07.22; Os09g0531900; OsI_24438; OsI_29736; OsI_32147; OsJ_22634; OsJ_27797; OsJ_30110; P0515E01.7; PHYPADRAFT_101904; PHYPADRAFT_146923; PHYPADRAFT_177102;

Source	GOs	Term	Type	Identity
Sma3	Golgi apparatus	GO:0005794	Cellular Component	-
Sma3	transferase activity, transferring glycosyl groups	GO:0016757	Molecular Function	-
Sma3	polygalacturonate 4-alpha-galacturonosyltransferase activity	GO:0047262	Molecular Function	-
Sma3	homogalacturonan biosynthetic process	GO:0010289	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Glycosyl transferase, family 8	IPR002495	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT3G61130.1	GAUT1, LGT1 galacturonosyltransferase 1 chr3:22622399-22625514 FORWARD LENGTH=673	2.0e-22	82%
RefSeq	Arabidopsis thaliana	NP_191672.1	alpha-1,4-galacturonosyltransferase 1 [Arabidopsis thaliana]	3.0e-22	82%
RefSeq	Populus trichocarpa	XP_002320745.1	glycosyltransferase [Populus trichocarpa]	7.0e-22	76%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9LE59

Fln msg: your sequence is shorter than subject: 49 - 673

Fln protein: FSDIENSAVCHYNGNMKPWLEIAMSKYRSYWTKYVKFDHPYLQQCNIS*

Protein Length: 50

Fln nts: AGTTTTCAGATATTGAAAATTCAGCTGTCTGTCACTATAATGGAAACATGAAGCCTTGGTTAGAGATAGCAATGAGCAAATATAGATCTTACTGGACAAAATATGTAAAATTTGATCATCCATATTTACAACAATGCAATATCAGTTAA___ATGGTTAGCATTTGCTATGTCAGTACTTGTCGGAGGAAGTGCATTTATATCCGTATTCACTTTGGTCCGTTTTCTGTTTCTATGCATATGTCCATGGAGTTCAGGATATCTGTATCTATTCATTTGTCGATGGAGATCAGGACATCTGTATCTATTCATTTGTCCATGGAGTTTAAGACAGATTAAGTGATGGCAAAATTGAAGCCAATTTTTTTGATTCTGGAAGGCAAAAACAATTGACAAGTGACTGCCTC

Fln Alignment:

HA8LWWM01BRHZL___DIENSAVCHYNGNMKPWLEIAMSKYRSYWTKYVKFDHPYLQQCNI
Q9LE59________________DIENAAVVHYNGNMKPWLELAMSKYRPYWTKYIKFDHPYLRRCNL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain